Uloženo v:
| Hlavní autor: | |
|---|---|
| Médium: | Recurso digital |
| Jazyk: | |
| Vydáno: |
Zenodo
2025
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| On-line přístup: | https://doi.org/10.5281/zenodo.14859131 |
| Tagy: |
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Obsah:
- <p>Initial release of (renamed) qbic-pipelines/vcftocounts.</p> <h3><code>Changed</code></h3> <ul> <li><a href="https://github.com/qbic-pipelines/vcftocounts/pull/25">#25</a> - Rename pipeline to vcftocounts + Prepare Release 2.0.0</li> <li><a href="https://github.com/qbic-pipelines/vcftocounts/pull/28">#28</a> - Move test data to test-datasets, create filter nf-test</li> </ul> <h3><code>Added</code></h3> <ul> <li><a href="https://github.com/qbic-pipelines/vcftocounts/pull/22">#22</a> - Remove ID column entries from VCFs</li> <li><a href="https://github.com/qbic-pipelines/vcftocounts/pull/23">#23</a> - Add filtering of VEP annotated VCF files using bcftools/view (no conda for NXF_VER <= 24.10.2)</li> </ul> <h3><code>Fixed</code></h3> <ul> <li><a href="https://github.com/qbic-pipelines/vcftocounts/pull/15">#15</a> - template update to v3.1.1</li> <li><a href="https://github.com/qbic-pipelines/vcftocounts/pull/16">#16</a> - Fix bcftools/reheader bug</li> <li><a href="https://github.com/qbic-pipelines/vcftocounts/pull/21">#21</a> - template update to v3.2.0</li> <li><a href="https://github.com/qbic-pipelines/vcftocounts/pull/24">#24</a> - Change branching logic to enable caching again + rename vcf2mat to vcf2counts (thank you @awgymer for helping)</li> </ul>