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| Format: | Recurso digital |
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Zenodo
2025
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| Online Access: | https://doi.org/10.5281/zenodo.16045366 |
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Table of Contents:
- <p><a href="https://shields.io/"></a> </p> <h1>Long read pipelines</h1> <p>This repository contains pipelines for processing of long read data from PacBio and/or Oxford Nanopore platforms. The pipelines are written in <a href="https://github.com/openwdl/wdl/blob/main/versions/1.0/SPEC.md#introduction">WDL 1.0</a> intended for use with Google Cloud Platform via the scientific workflow engine, <a href="https://github.com/broadinstitute/cromwell">Cromwell</a>. Processing is designed to be reasonably consistent between both long read platforms, and use platform-specific options or tasks where necessary.</p> <p>High level workflows can be found in the wdl/ directory.</p>