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| Main Authors: | , , , , , , , , , , , |
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| Format: | Recurso digital |
| Language: | |
| Published: |
Zenodo
2024
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| Online Access: | https://doi.org/10.5281/zenodo.16758970 |
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Table of Contents:
- <h3>Added</h3> <ul> <li>Workflow now accepts BAM as well as FASTQ files as input (using the <code>--bam</code> or <code>--fastq</code> parameters, respectively)</li> <li><code>--override_basecaller_cfg</code> parameter for cases where automatic basecall model detection fails or users wish to override the automatic choice.</li> </ul> <h3>Removed</h3> <ul> <li>The <code>--basecaller_cfg</code>, <code>--medaka_consensus_model</code>, and <code>--medaka_variant_model</code> parameters as the appropriate Medaka model is now automatically determined from the input data.</li> </ul> <h3>Changed</h3> <ul> <li>New docker images for <a href="https://hub.docker.com/r/ontresearch/resfinder">resfinder</a> and <a href="https://hub.docker.com/r/ontresearch/mlst">mlst</a>.</li> <li>Updated Medaka to v1.12.0.</li> <li>Updated minimum computer specs as flye was not performing robustly.</li> </ul>