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| Main Authors: | , , , , , |
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| Format: | Recurso digital |
| Language: | English |
| Published: |
Zenodo
2025
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| Subjects: | |
| Online Access: | https://doi.org/10.5281/zenodo.17747500 |
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Table of Contents:
- <p>Data repository for the manuscript Saldanha, Goepp, et al, 2025 "SwarmMAP: Swarm Learning for Decentralized Cell Type Annotation in Single Cell Sequencing Data".</p> <p>Contains all the processed data used in the manuscript, which consists of the following, publically available, raw datasets:</p> <p> </p> <table style="border-collapse: collapse; width: 100.063%; height: 949.4px;"><colgroup><col style="width: 6.75393%;"><col style="width: 17.0462%;"><col style="width: 15.2313%;"><col style="width: 12.9581%;"><col style="width: 31.178%;"><col style="width: 6.04712%;"><col style="width: 5.18325%;"><col style="width: 5.73298%;"></colgroup> <tbody> <tr style="height: 58.8px;"> <td style="height: 58.8px;"><br>Collection </td> <td style="height: 58.8px;">Collection reference</td> <td style="height: 58.8px;">Suspension type</td> <td style="height: 58.8px;">Study reference</td> <td style="height: 58.8px;">Download link</td> <td style="height: 58.8px;">Number of cells</td> <td style="height: 58.8px;">Number of cell types</td> <td style="height: 58.8px;">Number of cell subtypes</td> </tr> <tr style="height: 81.2px;"> <td style="height: 81.2px;"> <p>Heart</p> <p> </p> </td> <td style="height: 81.2px;"><a href="https://www.medrxiv.org/content/early/2025/10/13/2025.10.09.25337646.full.pdf">Bleckwehl et al., 2025</a></td> <td style="height: 81.2px;">single nuclei</td> <td style="height: 81.2px;"><a href="https://doi.org/10.1038/s41586-022-04817-8">Chaffin et al., 2022</a></td> <td style="height: 81.2px;"><a href="https://singlecell.broadinstitute.org/single_cell/study/SCP1303/">Chaffin 2022, Singel Cell Portal</a></td> <td style="height: 81.2px;">560696 (542216)</td> <td style="height: 81.2px;">14</td> <td style="height: 81.2px;">21</td> </tr> <tr style="height: 39.2px;"> <td style="height: 39.2px;"> </td> <td style="height: 39.2px;"> </td> <td style="height: 39.2px;"> </td> <td style="height: 39.2px;"><a href="https://doi.org/10.1038/s41586-022-05060-x">Kuppe et al., 2022</a></td> <td style="height: 39.2px;"><a href="https://cellxgene.cziscience.com/collections/8191c283-0816-424b-9b61-c3e1d6258a77">Kuppe 2022, CellxGene</a></td> <td style="height: 39.2px;">189349 (146325)</td> <td style="height: 39.2px;">13</td> <td style="height: 39.2px;">21</td> </tr> <tr style="height: 39.2px;"> <td style="height: 39.2px;"> </td> <td style="height: 39.2px;"> </td> <td style="height: 39.2px;"> </td> <td style="height: 39.2px;"><a href="https://doi.org/10.1038/s41586-020-2797-4">Litvinukova et al., 2020</a></td> <td style="height: 39.2px;"><a href="https://cellxgene.cziscience.com/collections/b52eb423-5d0d-4645-b217-e1c6d38b2e72v">Litvinukova 2020, CellxGene</a></td> <td style="height: 39.2px;">84953 (79916)</td> <td style="height: 39.2px;">14</td> <td style="height: 39.2px;">21</td> </tr> <tr style="height: 39.2px;"> <td style="height: 39.2px;"> </td> <td style="height: 39.2px;"> </td> <td style="height: 39.2px;"> </td> <td style="height: 39.2px;"><a href="https://doi.org/10.1126/science.abo1984">Reichart et al., 2022</a></td> <td style="height: 39.2px;"><a href="https://cellxgene.cziscience.com/collections/b52eb423-5d0d-4645-b217-e1c6d38b2e72e75342a8-0f3b-4ec5-8ee1-245a23e0f7cb">Reichart 2022, CellxGene</a></td> <td style="height: 39.2px;">361649 (349045)</td> <td style="height: 39.2px;">14</td> <td style="height: 39.2px;">21</td> </tr> <tr style="height: 58.8px;"> <td style="height: 58.8px;">Lung</td> <td style="height: 58.8px;"><a href="https://doi.org/10.1038/s41591-023-02327-2">Sikkema et al., 2023</a></td> <td style="height: 58.8px;">single cell</td> <td style="height: 58.8px;"><a href="https://doi.org/10.1126/sciadv.aba1972">Habermann et al., 2020</a></td> <td style="height: 58.8px;"><a href="https://cellxgene.cziscience.com/collections/b52eb423-5d0d-4645-b217-e1c6d38b2e726f6d381a-7701-4781-935c-db10d30de293">All Lung Studies</a></td> <td style="height: 58.8px;">115249</td> <td style="height: 58.8px;">17</td> <td style="height: 58.8px;">24</td> </tr> <tr style="height: 45px;"> <td style="height: 45px;"> </td> <td style="height: 45px;"> </td> <td style="height: 45px;"> </td> <td style="height: 45px;"><a href="https://doi.org/10.1038/s41586-020-2922-4">Travaglini et al., 2020</a></td> <td style="height: 45px;"><a href="https://cellxgene.cziscience.com/collections/b52eb423-5d0d-4645-b217-e1c6d38b2e726f6d381a-7701-4781-935c-db10d30de293">All Lung Studies</a></td> <td style="height: 45px;">39901</td> <td style="height: 45px;">17</td> <td style="height: 45px;">24</td> </tr> <tr style="height: 98px;"> <td style="height: 98px;"> </td> <td style="height: 98px;"> </td> <td style="height: 98px;"> </td> <td style="height: 98px;"><a href="https://doi.org/10.1038/s41586-020-03148-w">Grant et al., 2021</a></td> <td style="height: 98px;"><a href="https://cellxgene.cziscience.com/collections/b52eb423-5d0d-4645-b217-e1c6d38b2e726f6d381a-7701-4781-935c-db10d30de293">All Lung Studies</a></td> <td style="height: 98px;">47301</td> <td style="height: 98px;">17</td> <td style="height: 98px;">24</td> </tr> <tr style="height: 98px;"> <td style="height: 98px;"> </td> <td style="height: 98px;"> </td> <td style="height: 98px;"> </td> <td style="height: 98px;"><a href="https://doi.org/10.1164/rccm.201806-1037ED">Misharin & Budinger, 2018</a></td> <td style="height: 98px;"><a href="https://cellxgene.cziscience.com/collections/b52eb423-5d0d-4645-b217-e1c6d38b2e726f6d381a-7701-4781-935c-db10d30de293">All Lung Studies</a></td> <td style="height: 98px;">40580</td> <td style="height: 98px;">17</td> <td style="height: 98px;">24</td> </tr> <tr style="height: 98px;"> <td style="height: 98px;">Breast</td> <td style="height: 98px;"><a href="https://doi.org/10.1038/s41588-024-01688-9">Reed et al., 2024</a></td> <td style="height: 98px;">single cell </td> <td style="height: 98px;"><a href="https://doi.org/10.1016/j.cels.2022.06.005">Murrow et al., 2022</a></td> <td style="height: 98px;"><a href="https://cellxgene.cziscience.com/collections/b52eb423-5d0d-4645-b217-e1c6d38b2e7248259aa8-f168-4bf5-b797-af8e88da6637">All Breast Studies</a></td> <td style="height: 98px;">80726</td> <td style="height: 98px;">14</td> <td style="height: 98px;">22</td> </tr> <tr style="height: 98px;"> <td style="height: 98px;"> </td> <td style="height: 98px;"> </td> <td style="height: 98px;"> </td> <td style="height: 98px;"><a href="https://doi.org/10.1038/s41588-023-01298-x">Nee et al., 2023</a></td> <td style="height: 98px;"><a href="https://cellxgene.cziscience.com/collections/b52eb423-5d0d-4645-b217-e1c6d38b2e7248259aa8-f168-4bf5-b797-af8e88da6637">All Breast Studies</a></td> <td style="height: 98px;">219239</td> <td style="height: 98px;">14</td> <td style="height: 98px;">22</td> </tr> <tr style="height: 98px;"> <td style="height: 98px;"> </td> <td style="height: 98px;"> </td> <td style="height: 98px;"> </td> <td style="height: 98px;"><a href="https://doi.org/10.15252/embj.2020107333">Pal et al., 2021</a></td> <td style="height: 98px;"><a href="https://cellxgene.cziscience.com/collections/b52eb423-5d0d-4645-b217-e1c6d38b2e7248259aa8-f168-4bf5-b797-af8e88da6637">All Breast Studies</a></td> <td style="height: 98px;">116432</td> <td style="height: 98px;">14</td> <td style="height: 98px;">22</td> </tr> <tr style="height: 98px;"> <td style="height: 98px;"> </td> <td style="height: 98px;"> </td> <td style="height: 98px;"> </td> <td style="height: 98px;"><a href="https://doi.org/10.1038/s41467-021-27895-0">Twigger et al., 2022</a></td> <td style="height: 98px;"><a href="https://cellxgene.cziscience.com/collections/b52eb423-5d0d-4645-b217-e1c6d38b2e7248259aa8-f168-4bf5-b797-af8e88da6637">All Breast Studies</a></td> <td style="height: 98px;">100168</td> <td style="height: 98px;">14</td> <td style="height: 98px;">22</td> </tr> </tbody> </table> <p> </p>