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Main Authors: Farsakoglou, Anna-Maria, Dauphin, Benjamin, Olsson, Sanna, Pinosio, Sara, Milesi, Pascal, Reutimann, Oliver, Ullrich, Kristian, Liepelt, Sascha, Spanu, Ilaria, Piotti, Andrea, BAGNOLI, FRANCESCA, Alizoti, Paraskevi (Evi), Heer, Katrin, Opgenoorth, Lars, Giovanni G, Vendramin, Gonzalez-Martinez, Santiago C, Alia, Ricardo, Grivet, Delphine, Rellstab, Christian, Gugerli, Felix, Fady, Bruno, Scotti, Ivan, ARAVANOPOULOS, FILIPPOS
Format: Recurso digital
Language:English
Published: Zenodo 2025
Subjects:
SNPs
Accession Numbers
Genetic Diversity
Biodiversity Conservation
Conifer
Species
Online Access:https://doi.org/10.5281/zenodo.17761809
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Table of Contents:
  • <p>This dataset contains curated and harmonised metadata extracted from five NCBI BioProjects associated with the H2020 GenTree SPET genotyping of <em>Abies alba </em>(AA), <em>Pinus cembra </em>(PC), <em>Pinus halepensis </em>(PH), <em>Pinus nigra</em> (PN) and <em>Taxus baccata </em>(TB). Metadata fields include sample identifiers, organism, experiment information, sequencing platform, library strategy and run-level attributes.</p> <p>Raw FASTQ files are <em>not</em> included in this Zenodo record. These can be accessed directly through the corresponding NCBI SRA BioProjects and SRP directories:<br>• <strong>PRJNA791225</strong> (<em>A. alba</em>): <a href="https://identifiers.org/ncbi/insdc.sra:SRP384498(2022)" target="_new" rel="noopener">https://identifiers.org/ncbi/insdc.sra:SRP384498(2022)</a><br>• <strong>PRJNA791226</strong> (<em>P. cembra</em>): <a href="https://identifiers.org/ncbi/insdc.sra:SRP384504(2022)" target="_new" rel="noopener">https://identifiers.org/ncbi/insdc.sra:SRP384504(2022)</a><br>• <strong>PRJNA791282</strong> (<em>P. halepensis</em>): <a href="https://identifiers.org/ncbi/insdc.sra:SRP384719(2022)" target="_new" rel="noopener">https://identifiers.org/ncbi/insdc.sra:SRP384719(2022)</a><br>• <strong>PRJNA791288</strong> (<em>P. nigra</em>): <a href="https://identifiers.org/ncbi/insdc.sra:SRP384503(2022)" target="_new" rel="noopener">https://identifiers.org/ncbi/insdc.sra:SRP384503(2022)</a><br>• <strong>PRJNA791291</strong> (<em>T. baccata</em>): <a href="https://identifiers.org/ncbi/insdc.sra:SRP384501(2022)" target="_new" rel="noopener">https://identifiers.org/ncbi/insdc.sra:SRP384501(2022)</a></p> <p>The metadata included here were cleaned, standardised and merged across projects to support the analyses described in the associated manuscript. Users may reuse these metadata in accordance with the NCBI data usage policy and the license of this Zenodo deposit.</p>

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