-д хадгалсан:
| Үндсэн зохиолчид: | , , |
|---|---|
| Формат: | Recurso digital |
| Хэл сонгох: | |
| Хэвлэсэн: |
Zenodo
2026
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| Онлайн хандалт: | https://doi.org/10.5281/zenodo.19955188 |
| Шошгууд: |
Шошго нэмэх
Шошго байхгүй, Энэхүү баримтыг шошголох эхний хүн болох!
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Агуулга:
- <h2>What's Changed</h2> <ul> <li>Add docker image, data download script, and update README by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/3</li> <li>Data release V2 (1/N) by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/9</li> <li>Update dockerfile (3/N) by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/15</li> <li>Comparing before & after running SoupX and identifying best combo of parameters (2/N) by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/14</li> <li>Seurat processing, integration, and main lineage annotation (4/N) by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/8</li> <li>Subclustering of myeloid, lymphoid, and DC cells (1/n) by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/11</li> <li>Myeloid cells subcluster characterization (2/n) by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/12</li> <li>T cell subtype characterization (1/n) by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/16</li> <li>Analysis report for murine brain tumor CAR-T scRNA-seq dataset (2/n) by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/17</li> <li>Data release V3 by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/22</li> <li>Seurat reprocessing with top off data by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/23</li> <li>Endpoint samples analysis by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/20</li> <li>Re-run subclustering (1/n) by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/25</li> <li>Myeloid re-analysis (2/n) by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/26</li> <li>T cell re-analyze (3/n) by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/27</li> <li>Dendritic Cell subcluster characterization (4/n) by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/19</li> <li>Updated endpoint samples analysis (5/n) by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/28</li> <li>Updated analysis report after re-sequencing (6/n) by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/29</li> <li>Generate UMAPs for Haydar grant application (7/n) by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/30</li> <li>Data release v4 by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/36</li> <li>Add lineage marker dot plot and stacked barplot by @bicnasong in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/37</li> <li>Add ggthemes and ucell to dockerfile by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/43</li> <li>Add myeloid DE analysis with hallmark-annotated dot plots by @bicnasong in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/44</li> <li>TLR7/8 Signature Analysis by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/42</li> <li>Update Dockerfile: DESeq2, EnhancedVolcano, CellChat (1/N) by @bicnasong in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/46</li> <li>update lineage marker dotplot by @bicnasong in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/56</li> <li>update TLR analysis by @bicnasong in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/58</li> <li>Add Hallmark GSEA workflows and plotting for myeloid CAR comparisons (2/N) by @bicnasong in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/45</li> <li>add 12-myeloid-composition-analysis.Rmd by @bicnasong in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/57</li> <li>Refine myeloid dot plot generation by @bicnasong in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/62</li> <li>Refine TLR signature plots by @bicnasong in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/63</li> <li>Parameterize subtype composition analysis for multiple lineages by @bicnasong in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/64</li> <li>Run pseudobulk GSEA for myeloid, T cell, and DC by @bicnasong in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/65</li> <li>update TLR heatmaps excluding requested pathway modules by @bicnasong in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/67</li> <li>Refine myeloid plots by @bicnasong in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/68</li> <li>T cell re-clustering by @bicnasong in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/71</li> <li>DC re-clustering by @bicnasong in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/72</li> <li>Re-run AUCell on the re-clustered DC object by @bicnasong in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/77</li> <li>Data release v5 (1/N) by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/79</li> <li>add downstream-analyses module by @bicnasong in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/80</li> <li>Reorg analysis modules for upstream analyses by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/82</li> <li>Add authors, amend license by @jharenza in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/83</li> <li>Delete murine-cart-tumor module by @sychen9584 in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/84</li> </ul> <h2>New Contributors</h2> <ul> <li>@bicnasong made their first contribution in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/37</li> <li>@jharenza made their first contribution in https://github.com/childrens-bti/haydar-tme-cart-mb/pull/83</li> </ul> <p><strong>Full Changelog</strong>: https://github.com/childrens-bti/haydar-tme-cart-mb/commits/v1.0.0</p>