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Zenodo
2021
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| Accesso online: | https://doi.org/10.5281/zenodo.5608521 |
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| _version_ | 1866902098924273664 |
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| author | Sergio Alejandro Poveda Cuevas |
| author_facet | Sergio Alejandro Poveda Cuevas |
| contents | <p>Four <em>Flavivirus</em> NS1 protein models based on ZIKV-UG (Zika virus from Uganda), ZIKV-BR (Zika virus from Brazil), DENV2 (Dengue virus variant 2), and WNV (West Nile Virus). Due to missing regions in the crystals of these four NS1s (i.e., X-ray structures with PDB IDs 5K6K, 5GS6, 4O6B, and 4O6D, respectively), a homology protocol was applied. Models were built with Modeller 9.24 using default parameters, and the models with the best DOPE score were selected. NS1<sub>ZIKV-UG</sub> and NS1<sub>ZIKV-BR</sub> models are based on the templates with PDB ids 5K6K and 5GS6, respectively. For NS1<sub>DENV2</sub>, three templates were used: the two complete structures from NS1<sub>ZIKV-UG</sub> and NS1<sub>ZIKV-BR</sub>, and the crystal PDB ID 4O6B. For NS1<sub>WNV</sub>, the same strategy was followed as for NS1<sub>DENV2</sub>, but the third template was changed for the crystal PDB ID 4O6D.</p> <p>For more details, check the SI of <a href="https://doi.org/10.1016/j.virusres.2022.198838">https://doi.org/10.1016/j.virusres.2022.198838</a>.</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_5608521 |
| institution | Zenodo |
| language | |
| publishDate | 2021 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Flavivirus NS1 protein models Sergio Alejandro Poveda Cuevas NS1 protein virology structural bioinformatics <p>Four <em>Flavivirus</em> NS1 protein models based on ZIKV-UG (Zika virus from Uganda), ZIKV-BR (Zika virus from Brazil), DENV2 (Dengue virus variant 2), and WNV (West Nile Virus). Due to missing regions in the crystals of these four NS1s (i.e., X-ray structures with PDB IDs 5K6K, 5GS6, 4O6B, and 4O6D, respectively), a homology protocol was applied. Models were built with Modeller 9.24 using default parameters, and the models with the best DOPE score were selected. NS1<sub>ZIKV-UG</sub> and NS1<sub>ZIKV-BR</sub> models are based on the templates with PDB ids 5K6K and 5GS6, respectively. For NS1<sub>DENV2</sub>, three templates were used: the two complete structures from NS1<sub>ZIKV-UG</sub> and NS1<sub>ZIKV-BR</sub>, and the crystal PDB ID 4O6B. For NS1<sub>WNV</sub>, the same strategy was followed as for NS1<sub>DENV2</sub>, but the third template was changed for the crystal PDB ID 4O6D.</p> <p>For more details, check the SI of <a href="https://doi.org/10.1016/j.virusres.2022.198838">https://doi.org/10.1016/j.virusres.2022.198838</a>.</p> |
| title | Flavivirus NS1 protein models |
| topic | NS1 protein virology structural bioinformatics |
| url | https://doi.org/10.5281/zenodo.5608521 |