A KIM-compliant potfit for fitting sloppy interatomic potentials: Application to the EDIP model for silicon
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arXiv
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| Autori principali: | , , , , , |
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| Natura: | Preprint |
| Pubblicazione: |
2016
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| _version_ | 1866909188734582784 |
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| author | Wen, Mingjian Li, Junhao Brommer, Peter Elliott, Ryan S. Sethna, James P. Tadmor, Ellad B. |
| author_facet | Wen, Mingjian Li, Junhao Brommer, Peter Elliott, Ryan S. Sethna, James P. Tadmor, Ellad B. |
| contents | Fitted interatomic potentials are widely used in atomistic simulations thanks to their ability to compute the energy and forces on atoms quickly. However, the simulation results crucially depend on the quality of the potential being used. Force matching is a method aimed at constructing reliable and transferable interatomic potentials by matching the forces computed by the potential as closely as possible, with those obtained from first principles calculations. The potfit program is an implementation of the force-matching method that optimizes the potential parameters using a global minimization algorithm followed by a local minimization polish. We extended potfit in two ways. First, we adapted the code to be compliant with the KIM Application Programming Interface (API) standard (part of the Knowledgebase of Interatomic Models Project). This makes it possible to use potfit to fit many KIM potential models, not just those prebuilt into the potfit code. Second, we incorporated the geodesic Levenberg--Marquardt (LM) minimization algorithm into potfit as a new local minimization algorithm. The extended potfit was tested by generating a training set using the KIM Environment-Dependent Interatomic Potential (EDIP) model for silicon and using potfit to recover the potential parameters from different initial guesses. The results show that EDIP is a "sloppy model" in the sense that its predictions are insensitive to some of its parameters, which makes fitting more difficult. We find that the geodesic LM algorithm is particularly efficient for this case. The extended potfit code is the first step in developing a KIM-based fitting framework for interatomic potentials for bulk and two dimensional materials. The code is available for download via https://www.potfit.net. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_1611_03916 |
| institution | arXiv |
| publishDate | 2016 |
| record_format | arxiv |
| spellingShingle | A KIM-compliant potfit for fitting sloppy interatomic potentials: Application to the EDIP model for silicon Wen, Mingjian Li, Junhao Brommer, Peter Elliott, Ryan S. Sethna, James P. Tadmor, Ellad B. Other Condensed Matter Materials Science Computational Physics Fitted interatomic potentials are widely used in atomistic simulations thanks to their ability to compute the energy and forces on atoms quickly. However, the simulation results crucially depend on the quality of the potential being used. Force matching is a method aimed at constructing reliable and transferable interatomic potentials by matching the forces computed by the potential as closely as possible, with those obtained from first principles calculations. The potfit program is an implementation of the force-matching method that optimizes the potential parameters using a global minimization algorithm followed by a local minimization polish. We extended potfit in two ways. First, we adapted the code to be compliant with the KIM Application Programming Interface (API) standard (part of the Knowledgebase of Interatomic Models Project). This makes it possible to use potfit to fit many KIM potential models, not just those prebuilt into the potfit code. Second, we incorporated the geodesic Levenberg--Marquardt (LM) minimization algorithm into potfit as a new local minimization algorithm. The extended potfit was tested by generating a training set using the KIM Environment-Dependent Interatomic Potential (EDIP) model for silicon and using potfit to recover the potential parameters from different initial guesses. The results show that EDIP is a "sloppy model" in the sense that its predictions are insensitive to some of its parameters, which makes fitting more difficult. We find that the geodesic LM algorithm is particularly efficient for this case. The extended potfit code is the first step in developing a KIM-based fitting framework for interatomic potentials for bulk and two dimensional materials. The code is available for download via https://www.potfit.net. |
| title | A KIM-compliant potfit for fitting sloppy interatomic potentials: Application to the EDIP model for silicon |
| topic | Other Condensed Matter Materials Science Computational Physics |
| url | https://arxiv.org/abs/1611.03916 |