:: Library Catalog

Cover Image

Saved in:

Bibliographic Details
Main Authors:	Sbailò, Luigi, Dibak, Manuel, Noé, Frank
Format:	Preprint
Published:	2019
Subjects:	Computational Physics Biological Physics
Online Access:	https://arxiv.org/abs/1912.05216
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

A Fixed-Volume Variant of Gibbs-Ensemble Monte Carlo Yields Significant Speedup in Binodal Calculation
by: Qin, Sanbo, et al.
Published: (2025)

Deep learning path-like collective variable for enhanced sampling molecular dynamics
by: Fröhlking, Thorben, et al.
Published: (2024)

A Monte Carlo simulation framework for investigating the effect of inter-track coupling on H$_2$O$_2$ productions at ultra-high dose rates
by: Abolfath, Ramin, et al.
Published: (2024)

Learning data efficient coarse-grained molecular dynamics from forces and noise
by: Durumeric, Aleksander E. P., et al.
Published: (2024)

Advanced simulations with PLUMED: OPES and Machine Learning Collective Variables
by: Trizio, Enrico, et al.
Published: (2024)

Enabling Biomolecular Simulations with Neural Network Potentials in GROMACS
by: Müllender, Lukas, et al.
Published: (2026)

Enabling ab initio geometry optimization of strongly correlated systems with transferable deep quantum Monte Carlo
by: Szabó, P. Bernát, et al.
Published: (2026)

An improved penalty-based excited-state variational Monte Carlo approach with deep-learning ansatzes
by: Szabó, P. Bernát, et al.
Published: (2024)

Excitation of Low-Frequency Modes and the Effects of Protein Dynamics on Spectral Densities of Bacteriochlorophyll Molecules
by: Maity, Sayan, et al.
Published: (2026)

Simulating Light Propagation through Biological Media Using Monte-Carlo Method
by: Ghahremani, Maryam
Published: (2024)

Scaling Graph Neural Networks to Large Proteins
by: Airas, Justin, et al.
Published: (2024)

Predicting Mesoscopic Larmor Frequency Shifts in White Matter with Diffusion MRI -- A Monte-Carlo Study in axonal phantoms
by: Sandgaard, Anders Dyhr, et al.
Published: (2024)

General Theory of Static Response for Markov Jump Processes
by: Aslyamov, Timur, et al.
Published: (2024)

Monitoring Single DNA Docking Site Activity With Sequential Modes of an Optoplasmonic Whispering-Gallery Mode Biosensor
by: Eerqing, Narima, et al.
Published: (2025)

Monte Carlo simulation of SARS-CoV-2 radiation-induced inactivation for vaccine development
by: Francis, Ziad, et al.
Published: (2020)

Exploring the role of sample thickness for hyperspectral microscopy tissue discrimination through Monte Carlo simulations
by: Quintana-quintana, Laura, et al.
Published: (2025)

Deep quantum Monte Carlo approach for polaritonic chemistry
by: Tang, Yifan, et al.
Published: (2025)

Ab-initio simulation of excited-state potential energy surfaces with transferable deep quantum Monte Carlo
by: Schätzle, Zeno, et al.
Published: (2025)

Mie scattering due to tissue structures in the terahertz regime: Experimental and Monte Carlo verification using diffused polarimetric imaging in highly attenuating tissue phantoms
by: Heller, Erica, et al.
Published: (2024)

Comment on "Reproducibility study of Monte Carlo simulations for nanoparticle dose enhancement and biological modeling of cell survival curves" by Velten et al. [Biomed Phys Eng Express 2023;9:045004]
by: Rabus, Hans
Published: (2023)

Quantum Jump Approach for Photosynthetic Energy Transfer with Chemical Reaction and Fluorescence Loss
by: Li, Rui, et al.
Published: (2025)

Large Scale Training of Graph Neural Networks for Optimal Markov-Chain Partitioning Using the Kemeny Constant
by: Martino, Sam Alexander, et al.
Published: (2023)

The Effect of a Knot on the Thermal Stability of Protein MJ0366: Insights from Molecular Dynamics and Monte Carlo Simulations
by: Begun, A. M., et al.
Published: (2024)

TorchMD-Net 2.0: Fast Neural Network Potentials for Molecular Simulations
by: Pelaez, Raul P., et al.
Published: (2024)

AMARO: All Heavy-Atom Transferable Neural Network Potentials of Protein Thermodynamics
by: Mirarchi, Antonio, et al.
Published: (2024)

Computing macroscopic reaction rates in reaction-diffusion systems using Monte Carlo simulations
by: Swailem, Mohamed, et al.
Published: (2024)

Phase behaviour of semiflexible lattice polymers in poor-solvent solution: mean-field theory and Monte Carlo simulations
by: Marcato, Davide, et al.
Published: (2023)

Modes of Mechanical Guidance of Adhesion-Independent Cell Migration
by: Gertack, Hanna Luise, et al.
Published: (2025)

Dummy Atom Based Thermodynamic Integration Accurately Predicts Disulfide Redox Free Energies in Proteins
by: Mejia-Rodriguez, Daniel, et al.
Published: (2025)

Diversity in emergent cell locomotion from the coupling cytosolic and cortical Marangoni flows with reaction-diffusion dynamics
by: Ivšić, Blaž, et al.
Published: (2025)

Developing Parameter-Reduction Methods on a Biophysical Model of Auditory Hair Cells
by: Marcinik, Joseph M., et al.
Published: (2023)

Extreme scaling of the metadynamics of paths algorithm on the pre-exascale JUWELS Booster supercomputer
by: Malapally, Nitin, et al.
Published: (2025)

Liquid Crystal Theory of Biomembranes
by: Ou-Yang, Zhong-Can, et al.
Published: (2026)

Large Language Models as AI Agents for Digital Atoms and Molecules: Catalyzing a New Era in Computational Biophysics
by: Xia, Yijie, et al.
Published: (2025)

Applying an electrostatic cross-correlation to the CFTR-ATP interaction
by: Saad-Falcon, Alex, et al.
Published: (2024)

Orientation-Dependent Protein Binding at Nanoparticle Interfaces
by: Annapoorani, Vigneshwari Karunakaran, et al.
Published: (2026)

Local Volume Concentration, Packing Domains and Scaling Properties of Chromatin
by: Carignano, Marcelo, et al.
Published: (2023)

An RBC-MsUQ Framework for Red Blood Cell Morpho-Mechanics
by: Wang, Shuo, et al.
Published: (2025)

Cauliflower shapes of bacterial clusters in the off-lattice Eden model for bacterial growth in a Petri dish with an agar layer
by: Kaczmarczyk, Szymon, et al.
Published: (2024)

Link Node: A Method to Characterize the Chain Topology of Intrinsically Disordered Proteins
by: Lang, Danqi, et al.
Published: (2024)