Adversarial reverse mapping of condensed-phase molecular structures: Chemical transferability
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arXiv
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| Format: | Preprint |
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2021
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| _version_ | 1866929381232869376 |
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| author | Stieffenhofer, Marc Bereau, Tristan Wand, Michael |
| author_facet | Stieffenhofer, Marc Bereau, Tristan Wand, Michael |
| contents | Switching between different levels of resolution is essential for multiscale modeling, but restoring details at higher resolution remains challenging. In our previous study we have introduced deepBackmap: a deep neural-network-based approach to reverse-map equilibrated molecular structures for condensed-phase systems. Our method combines data-driven and physics-based aspects, leading to high-quality reconstructed structures. In this work, we expand the scope of our model and examine its chemical transferability. To this end, we train deepBackmap solely on homogeneous molecular liquids of small molecules, and apply it to a more challenging polymer melt. We augment the generator's objective with different force-field-based terms as prior to regularize the results. The best performing physical prior depends on whether we train for a specific chemistry, or transfer our model. Our local environment representation combined with the sequential reconstruction of fine-grained structures help reach transferability of the learned correlations. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2101_04996 |
| institution | arXiv |
| publishDate | 2021 |
| record_format | arxiv |
| spellingShingle | Adversarial reverse mapping of condensed-phase molecular structures: Chemical transferability Stieffenhofer, Marc Bereau, Tristan Wand, Michael Chemical Physics Computational Physics Switching between different levels of resolution is essential for multiscale modeling, but restoring details at higher resolution remains challenging. In our previous study we have introduced deepBackmap: a deep neural-network-based approach to reverse-map equilibrated molecular structures for condensed-phase systems. Our method combines data-driven and physics-based aspects, leading to high-quality reconstructed structures. In this work, we expand the scope of our model and examine its chemical transferability. To this end, we train deepBackmap solely on homogeneous molecular liquids of small molecules, and apply it to a more challenging polymer melt. We augment the generator's objective with different force-field-based terms as prior to regularize the results. The best performing physical prior depends on whether we train for a specific chemistry, or transfer our model. Our local environment representation combined with the sequential reconstruction of fine-grained structures help reach transferability of the learned correlations. |
| title | Adversarial reverse mapping of condensed-phase molecular structures: Chemical transferability |
| topic | Chemical Physics Computational Physics |
| url | https://arxiv.org/abs/2101.04996 |