DiagSet: a dataset for prostate cancer histopathological image classification
Fuente:
arXiv
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| Auteurs principaux: | , , , , , , , , , , |
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| Format: | Preprint |
| Publié: |
2021
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| Sujets: | |
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| _version_ | 1866909214135287808 |
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| author | Koziarski, Michał Cyganek, Bogusław Niedziela, Przemysław Olborski, Bogusław Antosz, Zbigniew Żydak, Marcin Kwolek, Bogdan Wąsowicz, Paweł Bukała, Andrzej Swadźba, Jakub Sitkowski, Piotr |
| author_facet | Koziarski, Michał Cyganek, Bogusław Niedziela, Przemysław Olborski, Bogusław Antosz, Zbigniew Żydak, Marcin Kwolek, Bogdan Wąsowicz, Paweł Bukała, Andrzej Swadźba, Jakub Sitkowski, Piotr |
| contents | Cancer diseases constitute one of the most significant societal challenges. In this paper, we introduce a novel histopathological dataset for prostate cancer detection. The proposed dataset, consisting of over 2.6 million tissue patches extracted from 430 fully annotated scans, 4675 scans with assigned binary diagnoses, and 46 scans with diagnoses independently provided by a group of histopathologists can be found at https://github.com/michalkoziarski/DiagSet. Furthermore, we propose a machine learning framework for detection of cancerous tissue regions and prediction of scan-level diagnosis, utilizing thresholding to abstain from the decision in uncertain cases. The proposed approach, composed of ensembles of deep neural networks operating on the histopathological scans at different scales, achieves 94.6% accuracy in patch-level recognition and is compared in a scan-level diagnosis with 9 human histopathologists showing high statistical agreement. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2105_04014 |
| institution | arXiv |
| publishDate | 2021 |
| record_format | arxiv |
| spellingShingle | DiagSet: a dataset for prostate cancer histopathological image classification Koziarski, Michał Cyganek, Bogusław Niedziela, Przemysław Olborski, Bogusław Antosz, Zbigniew Żydak, Marcin Kwolek, Bogdan Wąsowicz, Paweł Bukała, Andrzej Swadźba, Jakub Sitkowski, Piotr Image and Video Processing Computer Vision and Pattern Recognition Machine Learning Cancer diseases constitute one of the most significant societal challenges. In this paper, we introduce a novel histopathological dataset for prostate cancer detection. The proposed dataset, consisting of over 2.6 million tissue patches extracted from 430 fully annotated scans, 4675 scans with assigned binary diagnoses, and 46 scans with diagnoses independently provided by a group of histopathologists can be found at https://github.com/michalkoziarski/DiagSet. Furthermore, we propose a machine learning framework for detection of cancerous tissue regions and prediction of scan-level diagnosis, utilizing thresholding to abstain from the decision in uncertain cases. The proposed approach, composed of ensembles of deep neural networks operating on the histopathological scans at different scales, achieves 94.6% accuracy in patch-level recognition and is compared in a scan-level diagnosis with 9 human histopathologists showing high statistical agreement. |
| title | DiagSet: a dataset for prostate cancer histopathological image classification |
| topic | Image and Video Processing Computer Vision and Pattern Recognition Machine Learning |
| url | https://arxiv.org/abs/2105.04014 |