Perturbation graphs, invariant prediction and causal relations in psychology
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| Format: | Preprint |
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2021
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| author | Waldorp, Lourens Kossakowski, Jolanda van der Maas, Han L. J. |
| author_facet | Waldorp, Lourens Kossakowski, Jolanda van der Maas, Han L. J. |
| contents | Networks (graphs) in psychology are often restricted to settings without interventions. Here we consider a framework borrowed from biology that involves multiple interventions from different contexts (observations and experiments) in a single analysis. The method is called perturbation graphs. In gene regulatory networks, the induced change in one gene is measured on all other genes in the analysis, thereby assessing possible causal relations. This is repeated for each gene in the analysis. A perturbation graph leads to the correct set of causes (not necessarily direct causes). Subsequent pruning of paths in the graph (called transitive reduction) should reveal direct causes. We show that transitive reduction will not in general lead to the correct underlying graph. We also show that invariant causal prediction is a generalisation of the perturbation graph method, where including additional variables does reveal direct causes, and thereby replacing transitive reduction. We conclude that perturbation graphs provide a promising new tool for experimental designs in psychology, and combined with invariant causal prediction make it possible to reveal direct causes instead of causal paths. As an illustration we apply the perturbation graphs and invariant causal prediction to a data set about attitudes on meat consumption and to a time series of a patient diagnosed with major depression disorder. |
| format | Preprint |
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arxiv_https___arxiv_org_abs_2109_00404 |
| institution | arXiv |
| publishDate | 2021 |
| record_format | arxiv |
| spellingShingle | Perturbation graphs, invariant prediction and causal relations in psychology Waldorp, Lourens Kossakowski, Jolanda van der Maas, Han L. J. Methodology 62P15 Networks (graphs) in psychology are often restricted to settings without interventions. Here we consider a framework borrowed from biology that involves multiple interventions from different contexts (observations and experiments) in a single analysis. The method is called perturbation graphs. In gene regulatory networks, the induced change in one gene is measured on all other genes in the analysis, thereby assessing possible causal relations. This is repeated for each gene in the analysis. A perturbation graph leads to the correct set of causes (not necessarily direct causes). Subsequent pruning of paths in the graph (called transitive reduction) should reveal direct causes. We show that transitive reduction will not in general lead to the correct underlying graph. We also show that invariant causal prediction is a generalisation of the perturbation graph method, where including additional variables does reveal direct causes, and thereby replacing transitive reduction. We conclude that perturbation graphs provide a promising new tool for experimental designs in psychology, and combined with invariant causal prediction make it possible to reveal direct causes instead of causal paths. As an illustration we apply the perturbation graphs and invariant causal prediction to a data set about attitudes on meat consumption and to a time series of a patient diagnosed with major depression disorder. |
| title | Perturbation graphs, invariant prediction and causal relations in psychology |
| topic | Methodology 62P15 |
| url | https://arxiv.org/abs/2109.00404 |