Heterogeneous popularity of metabolic reactions from evolution
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arXiv
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| Format: | Preprint |
| Published: |
2021
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| _version_ | 1866910287476555776 |
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| author | Lee, Mi Jin Lee, Deok-Sun |
| author_facet | Lee, Mi Jin Lee, Deok-Sun |
| contents | The composition of cellular metabolism is different across species. Empirical data reveal that bacterial species contain similar numbers of metabolic reactions but that the cross-species popularity of reactions is so heterogenous that some reactions are found in all the species while others are in just few species, characterized by a power-law distribution with the exponent one. Introducing an evolutionary model concretizing the stochastic recruitment of chemical reactions into the metabolism of different species at different times and their inheritance to descendants, we demonstrate that the exponential growth of the number of species containing a reaction and the saturated recruitment rate of brand-new reactions lead to the empirically identified power-law popularity distribution. Furthermore, the structural characteristics of metabolic networks and the species' phylogeny in our simulations agree well with empirical observations. |
| format | Preprint |
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arxiv_https___arxiv_org_abs_2111_04943 |
| institution | arXiv |
| publishDate | 2021 |
| record_format | arxiv |
| spellingShingle | Heterogeneous popularity of metabolic reactions from evolution Lee, Mi Jin Lee, Deok-Sun Populations and Evolution Biological Physics The composition of cellular metabolism is different across species. Empirical data reveal that bacterial species contain similar numbers of metabolic reactions but that the cross-species popularity of reactions is so heterogenous that some reactions are found in all the species while others are in just few species, characterized by a power-law distribution with the exponent one. Introducing an evolutionary model concretizing the stochastic recruitment of chemical reactions into the metabolism of different species at different times and their inheritance to descendants, we demonstrate that the exponential growth of the number of species containing a reaction and the saturated recruitment rate of brand-new reactions lead to the empirically identified power-law popularity distribution. Furthermore, the structural characteristics of metabolic networks and the species' phylogeny in our simulations agree well with empirical observations. |
| title | Heterogeneous popularity of metabolic reactions from evolution |
| topic | Populations and Evolution Biological Physics |
| url | https://arxiv.org/abs/2111.04943 |