BrainIB: Interpretable Brain Network-based Psychiatric Diagnosis with Graph Information Bottleneck
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arXiv
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| Format: | Preprint |
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2022
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| author | Zheng, Kaizhong Yu, Shujian Li, Baojuan Jenssen, Robert Chen, Badong |
| author_facet | Zheng, Kaizhong Yu, Shujian Li, Baojuan Jenssen, Robert Chen, Badong |
| contents | Developing a new diagnostic models based on the underlying biological mechanisms rather than subjective symptoms for psychiatric disorders is an emerging consensus. Recently, machine learning-based classifiers using functional connectivity (FC) for psychiatric disorders and healthy controls are developed to identify brain markers. However, existing machine learning-based diagnostic models are prone to over-fitting (due to insufficient training samples) and perform poorly in new test environment. Furthermore, it is difficult to obtain explainable and reliable brain biomarkers elucidating the underlying diagnostic decisions. These issues hinder their possible clinical applications. In this work, we propose BrainIB, a new graph neural network (GNN) framework to analyze functional magnetic resonance images (fMRI), by leveraging the famed Information Bottleneck (IB) principle. BrainIB is able to identify the most informative edges in the brain (i.e., subgraph) and generalizes well to unseen data. We evaluate the performance of BrainIB against 3 baselines and 7 state-of-the-art brain network classification methods on three psychiatric datasets and observe that our BrainIB always achieves the highest diagnosis accuracy. It also discovers the subgraph biomarkers which are consistent to clinical and neuroimaging findings. The source code and implementation details of BrainIB are freely available at GitHub repository (https://github.com/SJYuCNEL/brain-and-Information-Bottleneck/). |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2205_03612 |
| institution | arXiv |
| publishDate | 2022 |
| record_format | arxiv |
| spellingShingle | BrainIB: Interpretable Brain Network-based Psychiatric Diagnosis with Graph Information Bottleneck Zheng, Kaizhong Yu, Shujian Li, Baojuan Jenssen, Robert Chen, Badong Signal Processing Machine Learning Developing a new diagnostic models based on the underlying biological mechanisms rather than subjective symptoms for psychiatric disorders is an emerging consensus. Recently, machine learning-based classifiers using functional connectivity (FC) for psychiatric disorders and healthy controls are developed to identify brain markers. However, existing machine learning-based diagnostic models are prone to over-fitting (due to insufficient training samples) and perform poorly in new test environment. Furthermore, it is difficult to obtain explainable and reliable brain biomarkers elucidating the underlying diagnostic decisions. These issues hinder their possible clinical applications. In this work, we propose BrainIB, a new graph neural network (GNN) framework to analyze functional magnetic resonance images (fMRI), by leveraging the famed Information Bottleneck (IB) principle. BrainIB is able to identify the most informative edges in the brain (i.e., subgraph) and generalizes well to unseen data. We evaluate the performance of BrainIB against 3 baselines and 7 state-of-the-art brain network classification methods on three psychiatric datasets and observe that our BrainIB always achieves the highest diagnosis accuracy. It also discovers the subgraph biomarkers which are consistent to clinical and neuroimaging findings. The source code and implementation details of BrainIB are freely available at GitHub repository (https://github.com/SJYuCNEL/brain-and-Information-Bottleneck/). |
| title | BrainIB: Interpretable Brain Network-based Psychiatric Diagnosis with Graph Information Bottleneck |
| topic | Signal Processing Machine Learning |
| url | https://arxiv.org/abs/2205.03612 |