The origin of the Poisson distribution in stochastic dynamics of gene expression
Fuente:
arXiv
Enregistré dans:
| Auteur principal: | |
|---|---|
| Format: | Preprint |
| Publié: |
2022
|
| Sujets: | |
| Accès en ligne: | |
| Tags: |
Ajouter un tag
Pas de tags, Soyez le premier à ajouter un tag!
|
| _version_ | 1866912052300218368 |
|---|---|
| author | Lee, Julian |
| author_facet | Lee, Julian |
| contents | The Poisson distribution is the probability distribution of the number of independent events in a given period of time. Although the Poisson distribution appears ubiquitously in various stochastic dynamics of gene expression, both as time-dependent distributions and the stationary distributions, underlying independent events that give rise to such distributions have not been clear, especially in the presence of the degradation of gene products, which is not a Poisson process. I show that, in fact, the variable that follows the Poisson distribution is the number of independent events where biomolecules are created, which are destined to survive until the end of a given time duration. This new viewpoint allows us to derive time-dependent Poisson distributions as solutions of master equations for general class of protein production and degradation dynamics, including models with time-dependent rates and a non-Markovian model with delayed degradation. I then derive analytic forms of general time-dependent probability distributions by combining the Poisson distribution with the binomial or the multinomial distributions. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2206_01938 |
| institution | arXiv |
| publishDate | 2022 |
| record_format | arxiv |
| spellingShingle | The origin of the Poisson distribution in stochastic dynamics of gene expression Lee, Julian Statistical Mechanics Biological Physics The Poisson distribution is the probability distribution of the number of independent events in a given period of time. Although the Poisson distribution appears ubiquitously in various stochastic dynamics of gene expression, both as time-dependent distributions and the stationary distributions, underlying independent events that give rise to such distributions have not been clear, especially in the presence of the degradation of gene products, which is not a Poisson process. I show that, in fact, the variable that follows the Poisson distribution is the number of independent events where biomolecules are created, which are destined to survive until the end of a given time duration. This new viewpoint allows us to derive time-dependent Poisson distributions as solutions of master equations for general class of protein production and degradation dynamics, including models with time-dependent rates and a non-Markovian model with delayed degradation. I then derive analytic forms of general time-dependent probability distributions by combining the Poisson distribution with the binomial or the multinomial distributions. |
| title | The origin of the Poisson distribution in stochastic dynamics of gene expression |
| topic | Statistical Mechanics Biological Physics |
| url | https://arxiv.org/abs/2206.01938 |