Efficient implicit solvers for models of neuronal networks
Fuente:
arXiv
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| Autores principales: | , , |
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| Formato: | Preprint |
| Publicado: |
2022
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| _version_ | 1866918053569101824 |
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| author | Bonaventura, Luca Fernández-García, Soledad Gómez-Mármol, Macarena |
| author_facet | Bonaventura, Luca Fernández-García, Soledad Gómez-Mármol, Macarena |
| contents | We introduce economical versions of standard implicit ODE solvers that are specifically tailored for the efficient and accurate simulation of neural networks. These reformulations allow to achieve a significant increase in the efficiency of network simulations, by reducing the size of the algebraic systems effectively solved at each time step. While we focus here specifically on Explicit first step, Diagonally Implicit Runge Kutta methods (ESDIRK), similar simplifications can also be applied to any implicit ODE solver. In order to demonstrate the capabilities of the proposed methods, we consider networks based on three different single-cell models with slow-fast dynamics, including the classical FitzHugh-Nagumo model, a Intracellular Calcium Concentration model and the Hindmarsh-Rose model. Numerical experiments on the simulation of networks of increasing size based on these models demonstrate the superior efficiency of the proposed economical methods. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2210_01697 |
| institution | arXiv |
| publishDate | 2022 |
| record_format | arxiv |
| spellingShingle | Efficient implicit solvers for models of neuronal networks Bonaventura, Luca Fernández-García, Soledad Gómez-Mármol, Macarena Numerical Analysis We introduce economical versions of standard implicit ODE solvers that are specifically tailored for the efficient and accurate simulation of neural networks. These reformulations allow to achieve a significant increase in the efficiency of network simulations, by reducing the size of the algebraic systems effectively solved at each time step. While we focus here specifically on Explicit first step, Diagonally Implicit Runge Kutta methods (ESDIRK), similar simplifications can also be applied to any implicit ODE solver. In order to demonstrate the capabilities of the proposed methods, we consider networks based on three different single-cell models with slow-fast dynamics, including the classical FitzHugh-Nagumo model, a Intracellular Calcium Concentration model and the Hindmarsh-Rose model. Numerical experiments on the simulation of networks of increasing size based on these models demonstrate the superior efficiency of the proposed economical methods. |
| title | Efficient implicit solvers for models of neuronal networks |
| topic | Numerical Analysis |
| url | https://arxiv.org/abs/2210.01697 |