Assessing Opportunities of SYCL for Biological Sequence Alignment on GPU-based Systems
Fuente:
arXiv
Saved in:
| Main Authors: | Costanzo, Manuel, Rucci, Enzo, Sánchez, Carlos García, Naiouf, Marcelo, Prieto-Matías, Manuel |
|---|---|
| Format: | Preprint |
| Published: |
2022
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Analyzing the Performance Portability of SYCL across CPUs, GPUs, and Hybrid Systems with SW Sequence Alignment
by: Costanzo, Manuel, et al.
Published: (2024)
by: Costanzo, Manuel, et al.
Published: (2024)
Evaluating SYCL as a Unified Programming Model for Heterogeneous Systems
by: Marowka, Ami
Published: (2026)
by: Marowka, Ami
Published: (2026)
Enhanced OpenMP Algorithm to Compute All-Pairs Shortest Path on x86 Architectures
by: Calderón, Sergio, et al.
Published: (2024)
by: Calderón, Sergio, et al.
Published: (2024)
Intel(R) SHMEM: GPU-initiated OpenSHMEM using SYCL
by: Brooks, Alex, et al.
Published: (2024)
by: Brooks, Alex, et al.
Published: (2024)
KPerfIR: Towards an Open and Compiler-centric Ecosystem for GPU Kernel Performance Tooling on Modern AI Workloads
by: Guan, Yue, et al.
Published: (2025)
by: Guan, Yue, et al.
Published: (2025)
GPU Implementations for Midsize Integer Addition and Multiplication
by: Oancea, Cosmin E., et al.
Published: (2024)
by: Oancea, Cosmin E., et al.
Published: (2024)
Failure Transparency in Stateful Dataflow Systems (Technical Report)
by: Veresov, Aleksey, et al.
Published: (2024)
by: Veresov, Aleksey, et al.
Published: (2024)
Coordination-free Collaborative Replication based on Operational Transformation
by: Takeichi, Masato
Published: (2024)
by: Takeichi, Masato
Published: (2024)
Theoretical Foundations of GPU-Native Compilation for Rapid Code Iteration
by: Metinov, Adilet, et al.
Published: (2025)
by: Metinov, Adilet, et al.
Published: (2025)
GPU-Accelerated Synthesis of Mixed-Boolean Arithmetic: Beyond Caching
by: Bathie, Gabriel, et al.
Published: (2026)
by: Bathie, Gabriel, et al.
Published: (2026)
ARGUS: Agentic GPU Optimization Guided by Data-Flow Invariants
by: Mai, Haohui, et al.
Published: (2026)
by: Mai, Haohui, et al.
Published: (2026)
Toward Heterogeneous, Distributed, and Energy-Efficient Computing with SYCL
by: Cosenza, Biagio, et al.
Published: (2025)
by: Cosenza, Biagio, et al.
Published: (2025)
pSTL-Bench: A Micro-Benchmark Suite for Assessing Scalability of C++ Parallel STL Implementations
by: Laso, Ruben, et al.
Published: (2024)
by: Laso, Ruben, et al.
Published: (2024)
Evaluation of computational and energy performance in matrix multiplication algorithms on CPU and GPU using MKL, cuBLAS and SYCL
by: Torres, L. A., et al.
Published: (2024)
by: Torres, L. A., et al.
Published: (2024)
Unified schemes for directive-based GPU offloading
by: Miki, Yohei, et al.
Published: (2024)
by: Miki, Yohei, et al.
Published: (2024)
FPGA or GPU? Analyzing comparative research for application-specific guidance
by: Purkayastha, Arnab A, et al.
Published: (2025)
by: Purkayastha, Arnab A, et al.
Published: (2025)
AGAThA: Fast and Efficient GPU Acceleration of Guided Sequence Alignment for Long Read Mapping
by: Park, Seongyeon, et al.
Published: (2024)
by: Park, Seongyeon, et al.
Published: (2024)
Publish on Ping: A Better Way to Publish Reservations in Memory Reclamation for Concurrent Data Structures
by: Singh, Ajay, et al.
Published: (2025)
by: Singh, Ajay, et al.
Published: (2025)
Timetide: A programming model for logically synchronous distributed systems
by: Kenwright, Logan, et al.
Published: (2025)
by: Kenwright, Logan, et al.
Published: (2025)
Hydra: Virtualized Multi-Language Runtime for High-Density Serverless Platforms
by: Ivanenko, Serhii, et al.
Published: (2022)
by: Ivanenko, Serhii, et al.
Published: (2022)
MCFuser: High-Performance and Rapid Fusion of Memory-Bound Compute-Intensive Operators
by: Zhang, Zheng, et al.
Published: (2025)
by: Zhang, Zheng, et al.
Published: (2025)
Verifying Properties of Index Arrays in a Purely-Functional Data-Parallel Language
by: Hinnerskov, Nikolaj Hey, et al.
Published: (2025)
by: Hinnerskov, Nikolaj Hey, et al.
Published: (2025)
An MLIR pipeline for offloading Fortran to FPGAs via OpenMP
by: Rodriguez-Canal, Gabriel, et al.
Published: (2025)
by: Rodriguez-Canal, Gabriel, et al.
Published: (2025)
Sal: Multi-modal Verification of Replicated Data Types
by: Ramesh, Pranav, et al.
Published: (2026)
by: Ramesh, Pranav, et al.
Published: (2026)
Flo: a Semantic Foundation for Progressive Stream Processing
by: Laddad, Shadaj, et al.
Published: (2024)
by: Laddad, Shadaj, et al.
Published: (2024)
Choreographies as Macros
by: Bohosian, Alexander, et al.
Published: (2025)
by: Bohosian, Alexander, et al.
Published: (2025)
OMP4Py: a pure Python implementation of OpenMP
by: Piñeiro, César, et al.
Published: (2024)
by: Piñeiro, César, et al.
Published: (2024)
Suki: Choreographed Distributed Dataflow in Rust
by: Laddad, Shadaj, et al.
Published: (2024)
by: Laddad, Shadaj, et al.
Published: (2024)
Towards a Function-as-a-Service Choreographic Programming Language: Examples and Applications
by: De Palma, Giuseppe, et al.
Published: (2024)
by: De Palma, Giuseppe, et al.
Published: (2024)
On the Duality of Task and Actor Programming Models
by: Yadav, Rohan, et al.
Published: (2025)
by: Yadav, Rohan, et al.
Published: (2025)
GuStL - An Experimental Guarded States Language
by: Schirmer, Oskar
Published: (2016)
by: Schirmer, Oskar
Published: (2016)
Detrimental task execution patterns in mainstream OpenMP runtimes
by: Tuft, Adam S., et al.
Published: (2024)
by: Tuft, Adam S., et al.
Published: (2024)
We Know I Know You Know; Choreographic Programming With Multicast and Multiply Located Values
by: Bates, Mako, et al.
Published: (2024)
by: Bates, Mako, et al.
Published: (2024)
Extending Contract Verification for Parallel Programming Models to Fortran
by: Oraji, Yussur Mustafa, et al.
Published: (2026)
by: Oraji, Yussur Mustafa, et al.
Published: (2026)
Mat2Boundary: Treating User-Defined Boundary Condition as SpMV for Distributed PDE Solvers on Block-Structured Grids
by: Cai, Yanzheng, et al.
Published: (2026)
by: Cai, Yanzheng, et al.
Published: (2026)
Streamlining Cloud-Native Application Development and Deployment with Robust Encapsulation
by: Lertpongrujikorn, Pawissanutt, et al.
Published: (2024)
by: Lertpongrujikorn, Pawissanutt, et al.
Published: (2024)
PRDTs: Composable Knowledge-Based Consensus Protocols with Replicated Data Types
by: Haas, Julian, et al.
Published: (2025)
by: Haas, Julian, et al.
Published: (2025)
Distributed Locking as a Data Type
by: Haas, Julian, et al.
Published: (2024)
by: Haas, Julian, et al.
Published: (2024)
Fully integrating the Flang Fortran compiler with standard MLIR
by: Brown, Nick
Published: (2024)
by: Brown, Nick
Published: (2024)
Introducing Support for Move Operations in Melda CRDT
by: Brocco, Amos
Published: (2025)
by: Brocco, Amos
Published: (2025)
Similar Items
-
Analyzing the Performance Portability of SYCL across CPUs, GPUs, and Hybrid Systems with SW Sequence Alignment
by: Costanzo, Manuel, et al.
Published: (2024) -
Evaluating SYCL as a Unified Programming Model for Heterogeneous Systems
by: Marowka, Ami
Published: (2026) -
Enhanced OpenMP Algorithm to Compute All-Pairs Shortest Path on x86 Architectures
by: Calderón, Sergio, et al.
Published: (2024) -
Intel(R) SHMEM: GPU-initiated OpenSHMEM using SYCL
by: Brooks, Alex, et al.
Published: (2024) -
KPerfIR: Towards an Open and Compiler-centric Ecosystem for GPU Kernel Performance Tooling on Modern AI Workloads
by: Guan, Yue, et al.
Published: (2025)