COVRECON: Combining Genome-scale Metabolic Network Reconstruction and Data-driven Inverse Modeling to Reveal Changes in Metabolic Interaction Networks
Fuente:
arXiv
Saved in:
| Main Authors: | Li, Jiahang, Waldherr, Steffen, Weckwerth, Wolfram |
|---|---|
| Format: | Preprint |
| Published: |
2023
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Optimal and $H_\infty$ Control of Stochastic Reaction Networks
by: Briat, Corentin, et al.
Published: (2021)
by: Briat, Corentin, et al.
Published: (2021)
Realizing Reduced and Sparse Biochemical Reaction Networks from Dynamics
by: Filo, Maurice, et al.
Published: (2025)
by: Filo, Maurice, et al.
Published: (2025)
GPU-accelerated Modeling of Biological Regulatory Networks
by: Reimer, Joyce, et al.
Published: (2025)
by: Reimer, Joyce, et al.
Published: (2025)
Dynamical model-based experiment design for drug repositioning
by: Aalto, Atte, et al.
Published: (2025)
by: Aalto, Atte, et al.
Published: (2025)
A necessary condition for non-monotonic dose response, with an application to a kinetic proofreading model -- Extended version
by: Yu, Polly Y., et al.
Published: (2024)
by: Yu, Polly Y., et al.
Published: (2024)
Dynamic Sensor Selection for Biomarker Discovery
by: Pickard, Joshua, et al.
Published: (2024)
by: Pickard, Joshua, et al.
Published: (2024)
Biomolecular LQR under Partial Observation
by: Zhang, Xiaoyu, et al.
Published: (2025)
by: Zhang, Xiaoyu, et al.
Published: (2025)
Structural Stability Properties of Antithetic Integral (Rein) Control with Output Inhibition
by: Briat, Corentin, et al.
Published: (2022)
by: Briat, Corentin, et al.
Published: (2022)
Frequency Domain Identifiability and Sloppiness of Descriptor Systems with an LFT Structure
by: Zhou, Tong
Published: (2022)
by: Zhou, Tong
Published: (2022)
Sampling from the Solution Space and Metabolic Environments of Genome-Scale Metabolic Models
by: Zafeiropoulos, Haris, et al.
Published: (2026)
by: Zafeiropoulos, Haris, et al.
Published: (2026)
A Bilevel Integer Programming Approach for the Synchronous Attractor Control Problem
by: Moon, Kyungduk, et al.
Published: (2026)
by: Moon, Kyungduk, et al.
Published: (2026)
Optimal control of stochastic reaction networks with entropic control cost and emergence of mode-switching strategies
by: Horiguchi, Shuhei A., et al.
Published: (2024)
by: Horiguchi, Shuhei A., et al.
Published: (2024)
A Gene Ranking Framework Enhances the Design Efficiency of Genome-Scale Constraint-Based Metabolic Networks under Time Limits
by: Ma, Yier, et al.
Published: (2025)
by: Ma, Yier, et al.
Published: (2025)
NetAurHPD: Network Auralization Hyperlink Prediction Model to Identify Metabolic Pathways from Metabolomics Data
by: Bar-Tov, Tamir, et al.
Published: (2024)
by: Bar-Tov, Tamir, et al.
Published: (2024)
A Combinatorial Optimisation Approach to Multi-factorial Gap-filling in Genome-scale Metabolic Models (GEMs)
by: Kilby, Philip, et al.
Published: (2026)
by: Kilby, Philip, et al.
Published: (2026)
The Emergence of Chirality from Metabolism
by: Malloy, John F., et al.
Published: (2025)
by: Malloy, John F., et al.
Published: (2025)
Moment-based parameter inference with error guarantees for stochastic reaction networks
by: Li, Zekai, et al.
Published: (2024)
by: Li, Zekai, et al.
Published: (2024)
Identifying the Attractors of Gene Regulatory Networks from Expression Data under Uncertainty: An Interpretable Approach
by: Rowhanimanesh, Alireza
Published: (2024)
by: Rowhanimanesh, Alireza
Published: (2024)
Transcriptome and Redox Proteome Reveal Temporal Scales of Carbon Metabolism Regulation in Model Cyanobacteria Under Light Disturbance
by: Johnson, Connah G. M., et al.
Published: (2024)
by: Johnson, Connah G. M., et al.
Published: (2024)
Mixed-Integer Optimization for Loopless Flux Distributions in Metabolic Networks
by: Troppens, Hannah, et al.
Published: (2025)
by: Troppens, Hannah, et al.
Published: (2025)
Recursive Self-Composite Approach Towards Structural Understanding of Boolean Network
by: Kim, Jongrae, et al.
Published: (2023)
by: Kim, Jongrae, et al.
Published: (2023)
Multi-Scale Hybrid Modeling to Predict Cell Culture Process with Metabolic Phase Transitions
by: Wang, Keqi, et al.
Published: (2024)
by: Wang, Keqi, et al.
Published: (2024)
Multi-scale Metabolic Modeling and Simulation
by: Carstensen, Peter E., et al.
Published: (2026)
by: Carstensen, Peter E., et al.
Published: (2026)
Modularity Emerges from Action-Functional Constraints in Marine Metabolic Networks: A Biology-Scale Validation of the Network-Weighted Action Principle
by: Frasch, Martin G.
Published: (2026)
by: Frasch, Martin G.
Published: (2026)
Data-driven Synchronization for Network Systems with Noiseless Data
by: Li, Yongzhang, et al.
Published: (2025)
by: Li, Yongzhang, et al.
Published: (2025)
Approximate Hamilton-Jacobi Reachability Analysis for a Class of Two-Timescale Systems, with Application to Biological Models
by: Hirsch, Dylan, et al.
Published: (2025)
by: Hirsch, Dylan, et al.
Published: (2025)
Stability analysis for large-scale multi-agent molecular communication systems
by: Kotsuka, Taishi, et al.
Published: (2023)
by: Kotsuka, Taishi, et al.
Published: (2023)
A Thermal Study of Terahertz Induced Protein Interactions
by: Elayan, Hadeel, et al.
Published: (2024)
by: Elayan, Hadeel, et al.
Published: (2024)
Enzyme-Substrate Complex Formation Modulates Diffusion-Driven Patterning In Metabolic Pathways
by: Farivar, Faezeh
Published: (2025)
by: Farivar, Faezeh
Published: (2025)
A Topology-Based Machine Learning Model Decisively Outperforms Flux Balance Analysis in Predicting Metabolic Gene Essentiality
by: Boone, Justin
Published: (2025)
by: Boone, Justin
Published: (2025)
Incentive-Aware Models of Financial Networks
by: Jalan, Akhil, et al.
Published: (2022)
by: Jalan, Akhil, et al.
Published: (2022)
Graphery: Interactive Tutorials for Biological Network Algorithms
by: Zeng, Heyuan, et al.
Published: (2021)
by: Zeng, Heyuan, et al.
Published: (2021)
Revealing Strategic Interactions in Network Games Under Decaying Active Probing
by: Xin, Xiaoyu, et al.
Published: (2026)
by: Xin, Xiaoyu, et al.
Published: (2026)
Parameter Invariance Analysis of Moment Equations Using Dulmage-Mendelsohn Decomposition
by: Igarashi, Akito, et al.
Published: (2025)
by: Igarashi, Akito, et al.
Published: (2025)
Control systems for synthetic biology and a case-study in cell fate reprogramming
by: Del Vecchio, Domitilla
Published: (2026)
by: Del Vecchio, Domitilla
Published: (2026)
Total controllability analysis discovers explainable drugs for Covid-19 treatment
by: Wei, Xinru, et al.
Published: (2022)
by: Wei, Xinru, et al.
Published: (2022)
Analysis of Signal Distortion in Molecular Communication Channels Using Frequency Response
by: Kitada, Shoichiro, et al.
Published: (2024)
by: Kitada, Shoichiro, et al.
Published: (2024)
The role of individual compensation and acceptance decisions in crowdsourced delivery
by: Çınar, Alim Buğra, et al.
Published: (2023)
by: Çınar, Alim Buğra, et al.
Published: (2023)
Pricing, bundling, and driver behavior in crowdsourced delivery
by: Çınar, Alim Buğra, et al.
Published: (2025)
by: Çınar, Alim Buğra, et al.
Published: (2025)
Metabolism, information, and viability in a simulated physically-plausible protocell
by: Thomsen, Kristoffer R., et al.
Published: (2024)
by: Thomsen, Kristoffer R., et al.
Published: (2024)
Similar Items
-
Optimal and $H_\infty$ Control of Stochastic Reaction Networks
by: Briat, Corentin, et al.
Published: (2021) -
Realizing Reduced and Sparse Biochemical Reaction Networks from Dynamics
by: Filo, Maurice, et al.
Published: (2025) -
GPU-accelerated Modeling of Biological Regulatory Networks
by: Reimer, Joyce, et al.
Published: (2025) -
Dynamical model-based experiment design for drug repositioning
by: Aalto, Atte, et al.
Published: (2025) -
A necessary condition for non-monotonic dose response, with an application to a kinetic proofreading model -- Extended version
by: Yu, Polly Y., et al.
Published: (2024)