DNA-Correcting Codes: End-to-end Correction in DNA Storage Systems

Fuente: arXiv
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Autores principales: Boruchovsky, Avital, Bar-Lev, Daniella, Yaakobi, Eitan
Formato: Preprint
Publicado: 2023
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author Boruchovsky, Avital
Bar-Lev, Daniella
Yaakobi, Eitan
author_facet Boruchovsky, Avital
Bar-Lev, Daniella
Yaakobi, Eitan
contents This paper introduces a new solution to DNA storage that integrates all three steps of retrieval, namely clustering, reconstruction, and error correction. DNA-correcting codes are presented as a unique solution to the problem of ensuring that the output of the storage system is unique for any valid set of input strands. To this end, we introduce a novel distance metric to capture the unique behavior of the DNA storage system and provide necessary and sufficient conditions for DNA-correcting codes. The paper also includes several bounds and constructions of DNA-correcting codes.
format Preprint
id arxiv_https___arxiv_org_abs_2304_10391
institution arXiv
publishDate 2023
record_format arxiv
spellingShingle DNA-Correcting Codes: End-to-end Correction in DNA Storage Systems
Boruchovsky, Avital
Bar-Lev, Daniella
Yaakobi, Eitan
Information Theory
This paper introduces a new solution to DNA storage that integrates all three steps of retrieval, namely clustering, reconstruction, and error correction. DNA-correcting codes are presented as a unique solution to the problem of ensuring that the output of the storage system is unique for any valid set of input strands. To this end, we introduce a novel distance metric to capture the unique behavior of the DNA storage system and provide necessary and sufficient conditions for DNA-correcting codes. The paper also includes several bounds and constructions of DNA-correcting codes.
title DNA-Correcting Codes: End-to-end Correction in DNA Storage Systems
topic Information Theory
url https://arxiv.org/abs/2304.10391