High-pass filtered fidelity-imposed network edit (HP-FINE) for robust quantitative susceptibility mapping from high-pass filtered phase
Fuente:
arXiv
Salvato in:
| Autori principali: | , , , , , , |
|---|---|
| Natura: | Preprint |
| Pubblicazione: |
2023
|
| Soggetti: | |
| Accesso online: | |
| Tags: |
Aggiungi Tag
Nessun Tag, puoi essere il primo ad aggiungerne!!
|
| _version_ | 1866911194160300032 |
|---|---|
| author | Zhang, Jinwei Dimov, Alexey Li, Chao Zhang, Hang Nguyen, Thanh D. Spincemaille, Pascal Wang, Yi |
| author_facet | Zhang, Jinwei Dimov, Alexey Li, Chao Zhang, Hang Nguyen, Thanh D. Spincemaille, Pascal Wang, Yi |
| contents | Purpose: To improve the generalization ability of deep learning based predictions of quantitative susceptibility mapping (QSM) from high-pass filtered phase (HPFP) data. Methods: A network fine-tuning step called HP-FINE is proposed, which is based on the high-pass filtering forward model with low-frequency preservation regularization. Several comparisons were conducted: 1. HP-FINE with and without low-frequency regularization, 2. three 3D network architectures (Unet, Progressive Unet, and Big Unet), 3. two types of network output (recovered field and susceptibility), and 4. pre-training with and without the filtering augmentation. HPFP datasets with diverse high-pass filters, another acquisition voxel size, and prospective acquisition were used to assess the accuracy of QSM predictions. In the retrospective datasets, quantitative metrics (PSNR, SSIM, RMSE and HFEN) were used for evaluation. In the prospective dataset, statistics of ROI linear regression and Bland-Altman analysis were used for evaluation. Results: In the retrospective datasets, adding low-frequency regularization in HP-FINE substantially improved prediction accuracy compared to the pre-trained results, especially when combined with the filtering augmentation and recovered field output. In the prospective datasets, HP-FINE with low-frequency regularization and recovered field output demonstrated the preservation of ROI values, a result that was not achieved when using susceptibility as the output. Furthermore, Progressive Unet pre-trained with a combination of multiple losses outperformed both Unet and Progressive Unet pre-trained with a single loss in terms of preserving ROI values. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2305_03844 |
| institution | arXiv |
| publishDate | 2023 |
| record_format | arxiv |
| spellingShingle | High-pass filtered fidelity-imposed network edit (HP-FINE) for robust quantitative susceptibility mapping from high-pass filtered phase Zhang, Jinwei Dimov, Alexey Li, Chao Zhang, Hang Nguyen, Thanh D. Spincemaille, Pascal Wang, Yi Image and Video Processing Computer Vision and Pattern Recognition Purpose: To improve the generalization ability of deep learning based predictions of quantitative susceptibility mapping (QSM) from high-pass filtered phase (HPFP) data. Methods: A network fine-tuning step called HP-FINE is proposed, which is based on the high-pass filtering forward model with low-frequency preservation regularization. Several comparisons were conducted: 1. HP-FINE with and without low-frequency regularization, 2. three 3D network architectures (Unet, Progressive Unet, and Big Unet), 3. two types of network output (recovered field and susceptibility), and 4. pre-training with and without the filtering augmentation. HPFP datasets with diverse high-pass filters, another acquisition voxel size, and prospective acquisition were used to assess the accuracy of QSM predictions. In the retrospective datasets, quantitative metrics (PSNR, SSIM, RMSE and HFEN) were used for evaluation. In the prospective dataset, statistics of ROI linear regression and Bland-Altman analysis were used for evaluation. Results: In the retrospective datasets, adding low-frequency regularization in HP-FINE substantially improved prediction accuracy compared to the pre-trained results, especially when combined with the filtering augmentation and recovered field output. In the prospective datasets, HP-FINE with low-frequency regularization and recovered field output demonstrated the preservation of ROI values, a result that was not achieved when using susceptibility as the output. Furthermore, Progressive Unet pre-trained with a combination of multiple losses outperformed both Unet and Progressive Unet pre-trained with a single loss in terms of preserving ROI values. |
| title | High-pass filtered fidelity-imposed network edit (HP-FINE) for robust quantitative susceptibility mapping from high-pass filtered phase |
| topic | Image and Video Processing Computer Vision and Pattern Recognition |
| url | https://arxiv.org/abs/2305.03844 |