The Brain Tumor Segmentation (BraTS-METS) Challenge 2023: Brain Metastasis Segmentation on Pre-treatment MRI
Fuente:
arXiv
Salvato in:
| Autori principali: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Natura: | Preprint |
| Pubblicazione: |
2023
|
| Soggetti: | |
| Accesso online: | |
| Tags: |
Aggiungi Tag
Nessun Tag, puoi essere il primo ad aggiungerne!!
|
| _version_ | 1866929620104773632 |
|---|---|
| author | Moawad, Ahmed W. Janas, Anastasia Baid, Ujjwal Ramakrishnan, Divya Saluja, Rachit Ashraf, Nader Maleki, Nazanin Jekel, Leon Yordanov, Nikolay Fehringer, Pascal Gkampenis, Athanasios Amiruddin, Raisa Manteghinejad, Amirreza Adewole, Maruf Albrecht, Jake Anazodo, Udunna Aneja, Sanjay Anwar, Syed Muhammad Bergquist, Timothy Chiang, Veronica Chung, Verena Conte, Gian Marco Dako, Farouk Eddy, James Ezhov, Ivan Khalili, Nastaran Farahani, Keyvan Iglesias, Juan Eugenio Jiang, Zhifan Johanson, Elaine Kazerooni, Anahita Fathi Kofler, Florian Krantchev, Kiril LaBella, Dominic Van Leemput, Koen Li, Hongwei Bran Linguraru, Marius George Liu, Xinyang Meier, Zeke Menze, Bjoern H Moy, Harrison Osenberg, Klara Piraud, Marie Reitman, Zachary Shinohara, Russell Takeshi Wang, Chunhao Wiestler, Benedikt Wiggins, Walter Shafique, Umber Willms, Klara Avesta, Arman Bousabarah, Khaled Chakrabarty, Satrajit Gennaro, Nicolo Holler, Wolfgang Kaur, Manpreet LaMontagne, Pamela Lin, MingDe Lost, Jan Marcus, Daniel S. Maresca, Ryan Merkaj, Sarah Pedersen, Gabriel Cassinelli von Reppert, Marc Sotiras, Aristeidis Teytelboym, Oleg Tillmans, Niklas Westerhoff, Malte Youssef, Ayda Godfrey, Devon Floyd, Scott Rauschecker, Andreas Villanueva-Meyer, Javier Pfluger, Irada Cho, Jaeyoung Bendszus, Martin Brugnara, Gianluca Cramer, Justin Perez-Carillo, Gloria J. Guzman Johnson, Derek R. Kam, Anthony Kwan, Benjamin Yin Ming Lai, Lillian Lall, Neil U. Memon, Fatima Krycia, Mark Patro, Satya Narayana Petrovic, Bojan So, Tiffany Y. Thompson, Gerard Wu, Lei Schrickel, E. Brooke Bansal, Anu Barkhof, Frederik Besada, Cristina Chu, Sammy Druzgal, Jason Dusoi, Alexandru Farage, Luciano Feltrin, Fabricio Fong, Amy Fung, Steve H. Gray, R. Ian Ikuta, Ichiro Iv, Michael Postma, Alida A. Mahajan, Amit Joyner, David Krumpelman, Chase Letourneau-Guillon, Laurent Lincoln, Christie M. Maros, Mate E. Miller, Elka Moron, Fanny Nimchinsky, Esther A. Ozsarlak, Ozkan Patel, Uresh Rohatgi, Saurabh Saha, Atin Sayah, Anousheh Schwartz, Eric D. Shih, Robert Shiroishi, Mark S. Small, Juan E. Tanwar, Manoj Valerie, Jewels Weinberg, Brent D. White, Matthew L. Young, Robert Zohrabian, Vahe M. Azizova, Aynur Bruseler, Melanie Maria Theresa Ghonim, Mohanad Ghonim, Mohamed Okar, Abdullah Pasquini, Luca Sharifi, Yasaman Singh, Gagandeep Sollmann, Nico Soumala, Theodora Taherzadeh, Mahsa Vollmuth, Philipp Foltyn-Dumitru, Martha Malhotra, Ajay Abayazeed, Aly H. Dellepiane, Francesco Lohmann, Philipp Perez-Garcia, Victor M. Elhalawani, Hesham de Verdier, Maria Correia Al-Rubaiey, Sanaria Armindo, Rui Duarte Ashraf, Kholod Asla, Moamen M. Badawy, Mohamed Bisschop, Jeroen Lomer, Nima Broomand Bukatz, Jan Chen, Jim Cimflova, Petra Corr, Felix Crawley, Alexis Deptula, Lisa Elakhdar, Tasneem Shawali, Islam H. Faghani, Shahriar Frick, Alexandra Gulati, Vaibhav Haider, Muhammad Ammar Hierro, Fatima Dahl, Rasmus Holmboe Jacobs, Sarah Maria Hsieh, Kuang-chun Jim Kandemirli, Sedat G. Kersting, Katharina Kida, Laura Kollia, Sofia Koukoulithras, Ioannis Li, Xiao Abouelatta, Ahmed Mansour, Aya Maria-Zamfirescu, Ruxandra-Catrinel Marsiglia, Marcela Mateo-Camacho, Yohana Sarahi McArthur, Mark McDonnell, Olivia McHugh, Maire Moassefi, Mana Morsi, Samah Mostafa Munteanu, Alexander Nandolia, Khanak K. Naqvi, Syed Raza Nikanpour, Yalda Alnoury, Mostafa Nouh, Abdullah Mohamed Aly Pappafava, Francesca Patel, Markand D. Petrucci, Samantha Rawie, Eric Raymond, Scott Roohani, Borna Sabouhi, Sadeq Sanchez-Garcia, Laura M. Shaked, Zoe Suthar, Pokhraj P. Altes, Talissa Isufi, Edvin Dhemesh, Yaseen Gass, Jaime Thacker, Jonathan Tarabishy, Abdul Rahman Turner, Benjamin Vacca, Sebastiano Vilanilam, George K. Warren, Daniel Weiss, David Worede, Fikadu Yousry, Sara Lerebo, Wondwossen Aristizabal, Alejandro Karargyris, Alexandros Kassem, Hasan Pati, Sarthak Sheller, Micah Link, Katherine E. Calabrese, Evan Tahon, Nourel hoda Nada, Ayman Velichko, Yuri S. Bakas, Spyridon Rudie, Jeffrey D. Aboian, Mariam |
| author_facet | Moawad, Ahmed W. Janas, Anastasia Baid, Ujjwal Ramakrishnan, Divya Saluja, Rachit Ashraf, Nader Maleki, Nazanin Jekel, Leon Yordanov, Nikolay Fehringer, Pascal Gkampenis, Athanasios Amiruddin, Raisa Manteghinejad, Amirreza Adewole, Maruf Albrecht, Jake Anazodo, Udunna Aneja, Sanjay Anwar, Syed Muhammad Bergquist, Timothy Chiang, Veronica Chung, Verena Conte, Gian Marco Dako, Farouk Eddy, James Ezhov, Ivan Khalili, Nastaran Farahani, Keyvan Iglesias, Juan Eugenio Jiang, Zhifan Johanson, Elaine Kazerooni, Anahita Fathi Kofler, Florian Krantchev, Kiril LaBella, Dominic Van Leemput, Koen Li, Hongwei Bran Linguraru, Marius George Liu, Xinyang Meier, Zeke Menze, Bjoern H Moy, Harrison Osenberg, Klara Piraud, Marie Reitman, Zachary Shinohara, Russell Takeshi Wang, Chunhao Wiestler, Benedikt Wiggins, Walter Shafique, Umber Willms, Klara Avesta, Arman Bousabarah, Khaled Chakrabarty, Satrajit Gennaro, Nicolo Holler, Wolfgang Kaur, Manpreet LaMontagne, Pamela Lin, MingDe Lost, Jan Marcus, Daniel S. Maresca, Ryan Merkaj, Sarah Pedersen, Gabriel Cassinelli von Reppert, Marc Sotiras, Aristeidis Teytelboym, Oleg Tillmans, Niklas Westerhoff, Malte Youssef, Ayda Godfrey, Devon Floyd, Scott Rauschecker, Andreas Villanueva-Meyer, Javier Pfluger, Irada Cho, Jaeyoung Bendszus, Martin Brugnara, Gianluca Cramer, Justin Perez-Carillo, Gloria J. Guzman Johnson, Derek R. Kam, Anthony Kwan, Benjamin Yin Ming Lai, Lillian Lall, Neil U. Memon, Fatima Krycia, Mark Patro, Satya Narayana Petrovic, Bojan So, Tiffany Y. Thompson, Gerard Wu, Lei Schrickel, E. Brooke Bansal, Anu Barkhof, Frederik Besada, Cristina Chu, Sammy Druzgal, Jason Dusoi, Alexandru Farage, Luciano Feltrin, Fabricio Fong, Amy Fung, Steve H. Gray, R. Ian Ikuta, Ichiro Iv, Michael Postma, Alida A. Mahajan, Amit Joyner, David Krumpelman, Chase Letourneau-Guillon, Laurent Lincoln, Christie M. Maros, Mate E. Miller, Elka Moron, Fanny Nimchinsky, Esther A. Ozsarlak, Ozkan Patel, Uresh Rohatgi, Saurabh Saha, Atin Sayah, Anousheh Schwartz, Eric D. Shih, Robert Shiroishi, Mark S. Small, Juan E. Tanwar, Manoj Valerie, Jewels Weinberg, Brent D. White, Matthew L. Young, Robert Zohrabian, Vahe M. Azizova, Aynur Bruseler, Melanie Maria Theresa Ghonim, Mohanad Ghonim, Mohamed Okar, Abdullah Pasquini, Luca Sharifi, Yasaman Singh, Gagandeep Sollmann, Nico Soumala, Theodora Taherzadeh, Mahsa Vollmuth, Philipp Foltyn-Dumitru, Martha Malhotra, Ajay Abayazeed, Aly H. Dellepiane, Francesco Lohmann, Philipp Perez-Garcia, Victor M. Elhalawani, Hesham de Verdier, Maria Correia Al-Rubaiey, Sanaria Armindo, Rui Duarte Ashraf, Kholod Asla, Moamen M. Badawy, Mohamed Bisschop, Jeroen Lomer, Nima Broomand Bukatz, Jan Chen, Jim Cimflova, Petra Corr, Felix Crawley, Alexis Deptula, Lisa Elakhdar, Tasneem Shawali, Islam H. Faghani, Shahriar Frick, Alexandra Gulati, Vaibhav Haider, Muhammad Ammar Hierro, Fatima Dahl, Rasmus Holmboe Jacobs, Sarah Maria Hsieh, Kuang-chun Jim Kandemirli, Sedat G. Kersting, Katharina Kida, Laura Kollia, Sofia Koukoulithras, Ioannis Li, Xiao Abouelatta, Ahmed Mansour, Aya Maria-Zamfirescu, Ruxandra-Catrinel Marsiglia, Marcela Mateo-Camacho, Yohana Sarahi McArthur, Mark McDonnell, Olivia McHugh, Maire Moassefi, Mana Morsi, Samah Mostafa Munteanu, Alexander Nandolia, Khanak K. Naqvi, Syed Raza Nikanpour, Yalda Alnoury, Mostafa Nouh, Abdullah Mohamed Aly Pappafava, Francesca Patel, Markand D. Petrucci, Samantha Rawie, Eric Raymond, Scott Roohani, Borna Sabouhi, Sadeq Sanchez-Garcia, Laura M. Shaked, Zoe Suthar, Pokhraj P. Altes, Talissa Isufi, Edvin Dhemesh, Yaseen Gass, Jaime Thacker, Jonathan Tarabishy, Abdul Rahman Turner, Benjamin Vacca, Sebastiano Vilanilam, George K. Warren, Daniel Weiss, David Worede, Fikadu Yousry, Sara Lerebo, Wondwossen Aristizabal, Alejandro Karargyris, Alexandros Kassem, Hasan Pati, Sarthak Sheller, Micah Link, Katherine E. Calabrese, Evan Tahon, Nourel hoda Nada, Ayman Velichko, Yuri S. Bakas, Spyridon Rudie, Jeffrey D. Aboian, Mariam |
| contents | The translation of AI-generated brain metastases (BM) segmentation into clinical practice relies heavily on diverse, high-quality annotated medical imaging datasets. The BraTS-METS 2023 challenge has gained momentum for testing and benchmarking algorithms using rigorously annotated internationally compiled real-world datasets. This study presents the results of the segmentation challenge and characterizes the challenging cases that impacted the performance of the winning algorithms. Untreated brain metastases on standard anatomic MRI sequences (T1, T2, FLAIR, T1PG) from eight contributed international datasets were annotated in stepwise method: published UNET algorithms, student, neuroradiologist, final approver neuroradiologist. Segmentations were ranked based on lesion-wise Dice and Hausdorff distance (HD95) scores. False positives (FP) and false negatives (FN) were rigorously penalized, receiving a score of 0 for Dice and a fixed penalty of 374 for HD95. Eight datasets comprising 1303 studies were annotated, with 402 studies (3076 lesions) released on Synapse as publicly available datasets to challenge competitors. Additionally, 31 studies (139 lesions) were held out for validation, and 59 studies (218 lesions) were used for testing. Segmentation accuracy was measured as rank across subjects, with the winning team achieving a LesionWise mean score of 7.9. Common errors among the leading teams included false negatives for small lesions and misregistration of masks in space.The BraTS-METS 2023 challenge successfully curated well-annotated, diverse datasets and identified common errors, facilitating the translation of BM segmentation across varied clinical environments and providing personalized volumetric reports to patients undergoing BM treatment. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2306_00838 |
| institution | arXiv |
| publishDate | 2023 |
| record_format | arxiv |
| spellingShingle | The Brain Tumor Segmentation (BraTS-METS) Challenge 2023: Brain Metastasis Segmentation on Pre-treatment MRI Moawad, Ahmed W. Janas, Anastasia Baid, Ujjwal Ramakrishnan, Divya Saluja, Rachit Ashraf, Nader Maleki, Nazanin Jekel, Leon Yordanov, Nikolay Fehringer, Pascal Gkampenis, Athanasios Amiruddin, Raisa Manteghinejad, Amirreza Adewole, Maruf Albrecht, Jake Anazodo, Udunna Aneja, Sanjay Anwar, Syed Muhammad Bergquist, Timothy Chiang, Veronica Chung, Verena Conte, Gian Marco Dako, Farouk Eddy, James Ezhov, Ivan Khalili, Nastaran Farahani, Keyvan Iglesias, Juan Eugenio Jiang, Zhifan Johanson, Elaine Kazerooni, Anahita Fathi Kofler, Florian Krantchev, Kiril LaBella, Dominic Van Leemput, Koen Li, Hongwei Bran Linguraru, Marius George Liu, Xinyang Meier, Zeke Menze, Bjoern H Moy, Harrison Osenberg, Klara Piraud, Marie Reitman, Zachary Shinohara, Russell Takeshi Wang, Chunhao Wiestler, Benedikt Wiggins, Walter Shafique, Umber Willms, Klara Avesta, Arman Bousabarah, Khaled Chakrabarty, Satrajit Gennaro, Nicolo Holler, Wolfgang Kaur, Manpreet LaMontagne, Pamela Lin, MingDe Lost, Jan Marcus, Daniel S. Maresca, Ryan Merkaj, Sarah Pedersen, Gabriel Cassinelli von Reppert, Marc Sotiras, Aristeidis Teytelboym, Oleg Tillmans, Niklas Westerhoff, Malte Youssef, Ayda Godfrey, Devon Floyd, Scott Rauschecker, Andreas Villanueva-Meyer, Javier Pfluger, Irada Cho, Jaeyoung Bendszus, Martin Brugnara, Gianluca Cramer, Justin Perez-Carillo, Gloria J. Guzman Johnson, Derek R. Kam, Anthony Kwan, Benjamin Yin Ming Lai, Lillian Lall, Neil U. Memon, Fatima Krycia, Mark Patro, Satya Narayana Petrovic, Bojan So, Tiffany Y. Thompson, Gerard Wu, Lei Schrickel, E. Brooke Bansal, Anu Barkhof, Frederik Besada, Cristina Chu, Sammy Druzgal, Jason Dusoi, Alexandru Farage, Luciano Feltrin, Fabricio Fong, Amy Fung, Steve H. Gray, R. Ian Ikuta, Ichiro Iv, Michael Postma, Alida A. Mahajan, Amit Joyner, David Krumpelman, Chase Letourneau-Guillon, Laurent Lincoln, Christie M. Maros, Mate E. Miller, Elka Moron, Fanny Nimchinsky, Esther A. Ozsarlak, Ozkan Patel, Uresh Rohatgi, Saurabh Saha, Atin Sayah, Anousheh Schwartz, Eric D. Shih, Robert Shiroishi, Mark S. Small, Juan E. Tanwar, Manoj Valerie, Jewels Weinberg, Brent D. White, Matthew L. Young, Robert Zohrabian, Vahe M. Azizova, Aynur Bruseler, Melanie Maria Theresa Ghonim, Mohanad Ghonim, Mohamed Okar, Abdullah Pasquini, Luca Sharifi, Yasaman Singh, Gagandeep Sollmann, Nico Soumala, Theodora Taherzadeh, Mahsa Vollmuth, Philipp Foltyn-Dumitru, Martha Malhotra, Ajay Abayazeed, Aly H. Dellepiane, Francesco Lohmann, Philipp Perez-Garcia, Victor M. Elhalawani, Hesham de Verdier, Maria Correia Al-Rubaiey, Sanaria Armindo, Rui Duarte Ashraf, Kholod Asla, Moamen M. Badawy, Mohamed Bisschop, Jeroen Lomer, Nima Broomand Bukatz, Jan Chen, Jim Cimflova, Petra Corr, Felix Crawley, Alexis Deptula, Lisa Elakhdar, Tasneem Shawali, Islam H. Faghani, Shahriar Frick, Alexandra Gulati, Vaibhav Haider, Muhammad Ammar Hierro, Fatima Dahl, Rasmus Holmboe Jacobs, Sarah Maria Hsieh, Kuang-chun Jim Kandemirli, Sedat G. Kersting, Katharina Kida, Laura Kollia, Sofia Koukoulithras, Ioannis Li, Xiao Abouelatta, Ahmed Mansour, Aya Maria-Zamfirescu, Ruxandra-Catrinel Marsiglia, Marcela Mateo-Camacho, Yohana Sarahi McArthur, Mark McDonnell, Olivia McHugh, Maire Moassefi, Mana Morsi, Samah Mostafa Munteanu, Alexander Nandolia, Khanak K. Naqvi, Syed Raza Nikanpour, Yalda Alnoury, Mostafa Nouh, Abdullah Mohamed Aly Pappafava, Francesca Patel, Markand D. Petrucci, Samantha Rawie, Eric Raymond, Scott Roohani, Borna Sabouhi, Sadeq Sanchez-Garcia, Laura M. Shaked, Zoe Suthar, Pokhraj P. Altes, Talissa Isufi, Edvin Dhemesh, Yaseen Gass, Jaime Thacker, Jonathan Tarabishy, Abdul Rahman Turner, Benjamin Vacca, Sebastiano Vilanilam, George K. Warren, Daniel Weiss, David Worede, Fikadu Yousry, Sara Lerebo, Wondwossen Aristizabal, Alejandro Karargyris, Alexandros Kassem, Hasan Pati, Sarthak Sheller, Micah Link, Katherine E. Calabrese, Evan Tahon, Nourel hoda Nada, Ayman Velichko, Yuri S. Bakas, Spyridon Rudie, Jeffrey D. Aboian, Mariam Other Quantitative Biology Image and Video Processing The translation of AI-generated brain metastases (BM) segmentation into clinical practice relies heavily on diverse, high-quality annotated medical imaging datasets. The BraTS-METS 2023 challenge has gained momentum for testing and benchmarking algorithms using rigorously annotated internationally compiled real-world datasets. This study presents the results of the segmentation challenge and characterizes the challenging cases that impacted the performance of the winning algorithms. Untreated brain metastases on standard anatomic MRI sequences (T1, T2, FLAIR, T1PG) from eight contributed international datasets were annotated in stepwise method: published UNET algorithms, student, neuroradiologist, final approver neuroradiologist. Segmentations were ranked based on lesion-wise Dice and Hausdorff distance (HD95) scores. False positives (FP) and false negatives (FN) were rigorously penalized, receiving a score of 0 for Dice and a fixed penalty of 374 for HD95. Eight datasets comprising 1303 studies were annotated, with 402 studies (3076 lesions) released on Synapse as publicly available datasets to challenge competitors. Additionally, 31 studies (139 lesions) were held out for validation, and 59 studies (218 lesions) were used for testing. Segmentation accuracy was measured as rank across subjects, with the winning team achieving a LesionWise mean score of 7.9. Common errors among the leading teams included false negatives for small lesions and misregistration of masks in space.The BraTS-METS 2023 challenge successfully curated well-annotated, diverse datasets and identified common errors, facilitating the translation of BM segmentation across varied clinical environments and providing personalized volumetric reports to patients undergoing BM treatment. |
| title | The Brain Tumor Segmentation (BraTS-METS) Challenge 2023: Brain Metastasis Segmentation on Pre-treatment MRI |
| topic | Other Quantitative Biology Image and Video Processing |
| url | https://arxiv.org/abs/2306.00838 |