DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing
Fuente:
arXiv
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| Main Authors: | Zhang, Yangtian, Zhang, Zuobai, Zhong, Bozitao, Misra, Sanchit, Tang, Jian |
|---|---|
| Format: | Preprint |
| Published: |
2023
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| Subjects: | |
| Online Access: | |
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