Optimal transport for automatic alignment of untargeted metabolomic data
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arXiv
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| Main Authors: | Breeur, Marie, Stepaniants, George, Keski-Rahkonen, Pekka, Rigollet, Philippe, Viallon, Vivian |
|---|---|
| Format: | Preprint |
| Published: |
2023
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| Subjects: | |
| Online Access: | |
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