Bayesian inference for group-level cortical surface image-on-scalar-regression with Gaussian process priors
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arXiv
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| Format: | Preprint |
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2023
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| _version_ | 1866929513898704896 |
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| author | Whiteman, Andrew S. Johnson, Timothy D. Kang, Jian |
| author_facet | Whiteman, Andrew S. Johnson, Timothy D. Kang, Jian |
| contents | In regression-based analyses of group-level neuroimage data researchers typically fit a series of marginal general linear models to image outcomes at each spatially-referenced pixel. Spatial regularization of effects of interest is usually induced indirectly by applying spatial smoothing to the data during preprocessing. While this procedure often works well, resulting inference can be poorly calibrated. Spatial modeling of effects of interest leads to more powerful analyses, however the number of locations in a typical neuroimage can preclude standard computation with explicitly spatial models. Here we contribute a Bayesian spatial regression model for group-level neuroimaging analyses. We induce regularization of spatially varying regression coefficient functions through Gaussian process priors. When combined with a simple nonstationary model for the error process, our prior hierarchy can lead to more data-adaptive smoothing than standard methods. We achieve computational tractability through Vecchia approximation of our prior which, critically, can be constructed for a wide class of spatial correlation functions and results in prior models that retain full spatial rank. We outline several ways to work with our model in practice and compare performance against standard vertex-wise analyses. Finally we illustrate our method in an analysis of cortical surface fMRI task contrast data from a large cohort of children enrolled in the Adolescent Brain Cognitive Development study. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2306_03663 |
| institution | arXiv |
| publishDate | 2023 |
| record_format | arxiv |
| spellingShingle | Bayesian inference for group-level cortical surface image-on-scalar-regression with Gaussian process priors Whiteman, Andrew S. Johnson, Timothy D. Kang, Jian Methodology In regression-based analyses of group-level neuroimage data researchers typically fit a series of marginal general linear models to image outcomes at each spatially-referenced pixel. Spatial regularization of effects of interest is usually induced indirectly by applying spatial smoothing to the data during preprocessing. While this procedure often works well, resulting inference can be poorly calibrated. Spatial modeling of effects of interest leads to more powerful analyses, however the number of locations in a typical neuroimage can preclude standard computation with explicitly spatial models. Here we contribute a Bayesian spatial regression model for group-level neuroimaging analyses. We induce regularization of spatially varying regression coefficient functions through Gaussian process priors. When combined with a simple nonstationary model for the error process, our prior hierarchy can lead to more data-adaptive smoothing than standard methods. We achieve computational tractability through Vecchia approximation of our prior which, critically, can be constructed for a wide class of spatial correlation functions and results in prior models that retain full spatial rank. We outline several ways to work with our model in practice and compare performance against standard vertex-wise analyses. Finally we illustrate our method in an analysis of cortical surface fMRI task contrast data from a large cohort of children enrolled in the Adolescent Brain Cognitive Development study. |
| title | Bayesian inference for group-level cortical surface image-on-scalar-regression with Gaussian process priors |
| topic | Methodology |
| url | https://arxiv.org/abs/2306.03663 |