Vibronic fine structure in the nitrogen 1s photoelectron spectra from Franck-Condon simulations II: Indoles

Fuente: arXiv
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Autores principales: Wei, Minrui, Zhang, Lu, Tian, Guangjun, Hua, Weijie
Formato: Preprint
Publicado: 2023
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author Wei, Minrui
Zhang, Lu
Tian, Guangjun
Hua, Weijie
author_facet Wei, Minrui
Zhang, Lu
Tian, Guangjun
Hua, Weijie
contents The vibronic coupling effect in nitrogen 1s X-ray photoelectron spectra (XPS) was systematically studied for a family of 17 bicyclic indole molecules by combining Franck-Condon simulations (including the Duschinsky rotation effect) and density functional theory. The simulated vibrationally-resolved spectra of 4 molecules agree well with available experiments. Reliable predictions for this family further allowed us to summarize rules for spectral evolution in response to three types of common structural changes (side chain substitution, CH$\leftrightarrow$N replacement, and isomerization). Interestingly, vibronic properties of amine and imine nitrogen are clearly separated: they show negative and positive $Δ$ZPE (zero-point vibration energy of the core-ionized with respect to the ground state), respectively, indicating flatter and steeper PESs induced by the N 1s ionization; amine N's show stronger mode mixing effects than imine N's; the 1s ionizations on two types of nitrogens led to distinct changes in local bond lengths and angles. The rules are useful for a basic understanding of vibronic coupling in this family, and the precise spectra are useful for future reference and data mining studies.
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id arxiv_https___arxiv_org_abs_2307_01510
institution arXiv
publishDate 2023
record_format arxiv
spellingShingle Vibronic fine structure in the nitrogen 1s photoelectron spectra from Franck-Condon simulations II: Indoles
Wei, Minrui
Zhang, Lu
Tian, Guangjun
Hua, Weijie
Chemical Physics
Atomic and Molecular Clusters
Computational Physics
The vibronic coupling effect in nitrogen 1s X-ray photoelectron spectra (XPS) was systematically studied for a family of 17 bicyclic indole molecules by combining Franck-Condon simulations (including the Duschinsky rotation effect) and density functional theory. The simulated vibrationally-resolved spectra of 4 molecules agree well with available experiments. Reliable predictions for this family further allowed us to summarize rules for spectral evolution in response to three types of common structural changes (side chain substitution, CH$\leftrightarrow$N replacement, and isomerization). Interestingly, vibronic properties of amine and imine nitrogen are clearly separated: they show negative and positive $Δ$ZPE (zero-point vibration energy of the core-ionized with respect to the ground state), respectively, indicating flatter and steeper PESs induced by the N 1s ionization; amine N's show stronger mode mixing effects than imine N's; the 1s ionizations on two types of nitrogens led to distinct changes in local bond lengths and angles. The rules are useful for a basic understanding of vibronic coupling in this family, and the precise spectra are useful for future reference and data mining studies.
title Vibronic fine structure in the nitrogen 1s photoelectron spectra from Franck-Condon simulations II: Indoles
topic Chemical Physics
Atomic and Molecular Clusters
Computational Physics
url https://arxiv.org/abs/2307.01510