Random Wheeler Automata
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arXiv
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| Format: | Preprint |
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2023
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| _version_ | 1866916279778017280 |
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| author | Becker, Ruben Cenzato, Davide Kim, Sung-Hwan Kodric, Bojana Maso, Riccardo Prezza, Nicola |
| author_facet | Becker, Ruben Cenzato, Davide Kim, Sung-Hwan Kodric, Bojana Maso, Riccardo Prezza, Nicola |
| contents | Wheeler automata were introduced in 2017 as a tool to generalize existing indexing and compression techniques based on the Burrows-Wheeler transform. Intuitively, an automaton is said to be Wheeler if there exists a total order on its states reflecting the co-lexicographic order of the strings labeling the automaton's paths; this property makes it possible to represent the automaton's topology in a constant number of bits per transition, as well as efficiently solving pattern matching queries on its accepted regular language. After their introduction, Wheeler automata have been the subject of a prolific line of research, both from the algorithmic and language-theoretic points of view. A recurring issue faced in these studies is the lack of large datasets of Wheeler automata on which the developed algorithms and theories could be tested. One possible way to overcome this issue is to generate random Wheeler automata. Motivated by this observation, in this paper we initiate the theoretical study of random Wheeler automata, focusing on the deterministic case (Wheeler DFAs -- WDFAs). We start by extending the Erdős-Rényi random graph model to WDFAs, and proceed by providing an algorithm generating uniform WDFAs according to this model. Our algorithm generates a uniform WDFA with $n$ states, $m$ transitions, and alphabet's cardinality $σ$ in $O(m)$ expected time ($O(m\log m)$ worst-case time w.h.p.) and constant working space for all alphabets of size $σ\le m/\ln m$. As a by-product, we also give formulas for the number of distinct WDFAs and obtain that $ nσ+ (n - σ) \log σ$ bits are necessary and sufficient to encode a WDFA with $n$ states and alphabet of size $σ$, up to an additive $Θ(n)$ term. We present an implementation of our algorithm and show that it is extremely fast in practice, with a throughput of over 8 million transitions per second. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2307_07267 |
| institution | arXiv |
| publishDate | 2023 |
| record_format | arxiv |
| spellingShingle | Random Wheeler Automata Becker, Ruben Cenzato, Davide Kim, Sung-Hwan Kodric, Bojana Maso, Riccardo Prezza, Nicola Data Structures and Algorithms Wheeler automata were introduced in 2017 as a tool to generalize existing indexing and compression techniques based on the Burrows-Wheeler transform. Intuitively, an automaton is said to be Wheeler if there exists a total order on its states reflecting the co-lexicographic order of the strings labeling the automaton's paths; this property makes it possible to represent the automaton's topology in a constant number of bits per transition, as well as efficiently solving pattern matching queries on its accepted regular language. After their introduction, Wheeler automata have been the subject of a prolific line of research, both from the algorithmic and language-theoretic points of view. A recurring issue faced in these studies is the lack of large datasets of Wheeler automata on which the developed algorithms and theories could be tested. One possible way to overcome this issue is to generate random Wheeler automata. Motivated by this observation, in this paper we initiate the theoretical study of random Wheeler automata, focusing on the deterministic case (Wheeler DFAs -- WDFAs). We start by extending the Erdős-Rényi random graph model to WDFAs, and proceed by providing an algorithm generating uniform WDFAs according to this model. Our algorithm generates a uniform WDFA with $n$ states, $m$ transitions, and alphabet's cardinality $σ$ in $O(m)$ expected time ($O(m\log m)$ worst-case time w.h.p.) and constant working space for all alphabets of size $σ\le m/\ln m$. As a by-product, we also give formulas for the number of distinct WDFAs and obtain that $ nσ+ (n - σ) \log σ$ bits are necessary and sufficient to encode a WDFA with $n$ states and alphabet of size $σ$, up to an additive $Θ(n)$ term. We present an implementation of our algorithm and show that it is extremely fast in practice, with a throughput of over 8 million transitions per second. |
| title | Random Wheeler Automata |
| topic | Data Structures and Algorithms |
| url | https://arxiv.org/abs/2307.07267 |