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| Hauptverfasser: | , , , , , , |
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| Format: | Preprint |
| Veröffentlicht: |
2023
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| Schlagworte: | |
| Online-Zugang: | https://arxiv.org/abs/2308.00563 |
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| _version_ | 1866911745180696576 |
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| author | Midlik, Adam Nair, Sreenath Anyango, Stephen Deshpande, Mandar Sehnal, David Varadi, Mihaly Velankar, Sameer |
| author_facet | Midlik, Adam Nair, Sreenath Anyango, Stephen Deshpande, Mandar Sehnal, David Varadi, Mihaly Velankar, Sameer |
| contents | Summary: PDBImages is an innovative, open-source Node.js package that harnesses the power of the popular macromolecule structure visualization software Mol*. Designed for use by the scientific community, PDBImages provides a means to generate high-quality images for PDB and AlphaFold DB models. Its unique ability to render and save images directly to files in a browserless mode sets it apart, offering users a streamlined, automated process for macromolecular structure visualization. Here, we detail the implementation of PDBImages, enumerating its diverse image types and elaborating on its user-friendly setup. This powerful tool opens a new gateway for researchers to visualize, analyse, and share their work, fostering a deeper understanding of bioinformatics. Availability and Implementation: PDBImages is available as an npm package from https://www.npmjs.com/package/pdb-images. The source code is available from https://github.com/PDBeurope/pdb-images. Contact: mvaradi@ebi.ac.uk, sameer@ebi.ac.uk |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2308_00563 |
| institution | arXiv |
| publishDate | 2023 |
| record_format | arxiv |
| spellingShingle | PDBImages: A Command Line Tool for Automated Macromolecular Structure Visualization Midlik, Adam Nair, Sreenath Anyango, Stephen Deshpande, Mandar Sehnal, David Varadi, Mihaly Velankar, Sameer Biomolecules Summary: PDBImages is an innovative, open-source Node.js package that harnesses the power of the popular macromolecule structure visualization software Mol*. Designed for use by the scientific community, PDBImages provides a means to generate high-quality images for PDB and AlphaFold DB models. Its unique ability to render and save images directly to files in a browserless mode sets it apart, offering users a streamlined, automated process for macromolecular structure visualization. Here, we detail the implementation of PDBImages, enumerating its diverse image types and elaborating on its user-friendly setup. This powerful tool opens a new gateway for researchers to visualize, analyse, and share their work, fostering a deeper understanding of bioinformatics. Availability and Implementation: PDBImages is available as an npm package from https://www.npmjs.com/package/pdb-images. The source code is available from https://github.com/PDBeurope/pdb-images. Contact: mvaradi@ebi.ac.uk, sameer@ebi.ac.uk |
| title | PDBImages: A Command Line Tool for Automated Macromolecular Structure Visualization |
| topic | Biomolecules |
| url | https://arxiv.org/abs/2308.00563 |