PDBImages: A Command Line Tool for Automated Macromolecular Structure Visualization
Fuente:
arXiv
Guardado en:
| Autores principales: | Midlik, Adam, Nair, Sreenath, Anyango, Stephen, Deshpande, Mandar, Sehnal, David, Varadi, Mihaly, Velankar, Sameer |
|---|---|
| Formato: | Preprint |
| Publicado: |
2023
|
| Materias: | |
| Acceso en línea: | |
| Etiquetas: |
Agregar Etiqueta
Sin Etiquetas, Sea el primero en etiquetar este registro!
|
Ejemplares similares
Harnessing the 3D‐Beacons Network: A Comprehensive Guide to Accessing and Displaying Protein Structure Data
por: Paulyna Magaña, et al.
Publicado: (2024)
por: Paulyna Magaña, et al.
Publicado: (2024)
Describing and Sharing Molecular Visualizations Using the MolViewSpec Toolkit
por: Sebastian Bittrich, et al.
Publicado: (2024)
por: Sebastian Bittrich, et al.
Publicado: (2024)
From Possibility to Precision in Macromolecular Ensemble Prediction
por: Wankowicz, Stephanie A., et al.
Publicado: (2025)
por: Wankowicz, Stephanie A., et al.
Publicado: (2025)
ProS2Vi: a Python Tool for Visualizing Proteins Secondary Structure
por: Qasim, Luckman, et al.
Publicado: (2024)
por: Qasim, Luckman, et al.
Publicado: (2024)
Undesignable RNA Structure Identification via Rival Structure Generation and Structure Decomposition
por: Zhou, Tianshuo, et al.
Publicado: (2023)
por: Zhou, Tianshuo, et al.
Publicado: (2023)
QUBODock: A Pip-Installable QUBO Tool for Ligand Pose Generation
por: Yang, Pei-Kun
Publicado: (2025)
por: Yang, Pei-Kun
Publicado: (2025)
Learning Biomolecular Motion: The Physics-Informed Machine Learning Paradigm
por: Deshpande, Aaryesh
Publicado: (2025)
por: Deshpande, Aaryesh
Publicado: (2025)
Functional Amyloid Fibrils as Versatile Tools for Novel Biomaterials
por: Mortazavi, Shayan, et al.
Publicado: (2025)
por: Mortazavi, Shayan, et al.
Publicado: (2025)
Fast and Versatile RNA Design via Motif-level Divide-and-Conquer and Structure-level Rival Search
por: Zhou, Tianshuo, et al.
Publicado: (2026)
por: Zhou, Tianshuo, et al.
Publicado: (2026)
SwitchCraft: A Programmatic Framework for Designing State-Switching Proteins
por: Jing, Bowen, et al.
Publicado: (2026)
por: Jing, Bowen, et al.
Publicado: (2026)
A New Route for the Determination of Protein Structure and Function
por: Mejias, S. H., et al.
Publicado: (2024)
por: Mejias, S. H., et al.
Publicado: (2024)
A Comprehensive System for Secondary Structure Analysis of Protein Models
por: Kannan, Vedh
Publicado: (2024)
por: Kannan, Vedh
Publicado: (2024)
Paraplume: A fast and accurate paratope prediction method provides insights into repertoire-scale binding dynamics
por: Athènes, Gabriel, et al.
Publicado: (2025)
por: Athènes, Gabriel, et al.
Publicado: (2025)
Community recommendations on cryoEM data archiving and validation
por: Kleywegt, Gerard J., et al.
Publicado: (2023)
por: Kleywegt, Gerard J., et al.
Publicado: (2023)
SCOP: A Sequence-Structure Contrast-Aware Framework for Protein Function Prediction
por: Ma, Runze, et al.
Publicado: (2024)
por: Ma, Runze, et al.
Publicado: (2024)
Systems-Structure-Based Drug Design
por: Zaballa, Vincent D., et al.
Publicado: (2024)
por: Zaballa, Vincent D., et al.
Publicado: (2024)
IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction
por: The IntFold Team, et al.
Publicado: (2025)
por: The IntFold Team, et al.
Publicado: (2025)
SeedFold: Scaling Biomolecular Structure Prediction
por: Zhou, Yi, et al.
Publicado: (2025)
por: Zhou, Yi, et al.
Publicado: (2025)
Methods for Secondary and Tertiary Structure Prediction of Microproteins
por: Facelli, Julio C.
Publicado: (2025)
por: Facelli, Julio C.
Publicado: (2025)
STELLA: A Multimodal LLM for Protein Functional Annotation via Unified Sequence-Structure Encoding
por: Xiao, Hongwang, et al.
Publicado: (2025)
por: Xiao, Hongwang, et al.
Publicado: (2025)
Into the Unknown: From Structure to Disorder in Protein Function Prediction
por: Kolarić, Đesika, et al.
Publicado: (2025)
por: Kolarić, Đesika, et al.
Publicado: (2025)
Atomic Density Distributions in Proteins: Structural and Functional Implications
por: Touliopoulos, Sotirios, et al.
Publicado: (2025)
por: Touliopoulos, Sotirios, et al.
Publicado: (2025)
Automated Neuron Labelling Enables Generative Steering and Interpretability in Protein Language Models
por: Banerjee, Arjun, et al.
Publicado: (2025)
por: Banerjee, Arjun, et al.
Publicado: (2025)
Protein FID: Improved Evaluation of Protein Structure Generative Models
por: Faltings, Felix, et al.
Publicado: (2025)
por: Faltings, Felix, et al.
Publicado: (2025)
Structural-dynamic behavior of histamine in solution: the role of water models
por: Gavryushenko, Dmytro A., et al.
Publicado: (2026)
por: Gavryushenko, Dmytro A., et al.
Publicado: (2026)
Entropy Transfer Throughout the Structure of PDZ-2 and TIM-Barrel Proteins. A Dynamic Gaussian Network Model Study
por: Galaz, German Mino, et al.
Publicado: (2025)
por: Galaz, German Mino, et al.
Publicado: (2025)
Structure Language Models for Protein Conformation Generation
por: Lu, Jiarui, et al.
Publicado: (2024)
por: Lu, Jiarui, et al.
Publicado: (2024)
From sequence to protein structure and conformational dynamics with AI/ML
por: Ille, Alexander M., et al.
Publicado: (2025)
por: Ille, Alexander M., et al.
Publicado: (2025)
PyMOLfold: Interactive Protein and Ligand Structure Prediction in PyMOL
por: Ford, Colby T., et al.
Publicado: (2025)
por: Ford, Colby T., et al.
Publicado: (2025)
ProtComposer: Compositional Protein Structure Generation with 3D Ellipsoids
por: Stark, Hannes, et al.
Publicado: (2025)
por: Stark, Hannes, et al.
Publicado: (2025)
RiboPO: Preference Optimization for Structure- and Stability-Aware RNA Design
por: Sun, Minghao, et al.
Publicado: (2025)
por: Sun, Minghao, et al.
Publicado: (2025)
An Energy-Adaptive Elastic Equivariant Transformer Framework for Protein Structure Representation
por: Zhang, Zhongyue, et al.
Publicado: (2025)
por: Zhang, Zhongyue, et al.
Publicado: (2025)
FlexSBDD: Structure-Based Drug Design with Flexible Protein Modeling
por: Zhang, Zaixi, et al.
Publicado: (2024)
por: Zhang, Zaixi, et al.
Publicado: (2024)
Pushing the boundaries of Structure-Based Drug Design through Collaboration with Large Language Models
por: Gao, Bowen, et al.
Publicado: (2025)
por: Gao, Bowen, et al.
Publicado: (2025)
RiboDiffusion: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models
por: Huang, Han, et al.
Publicado: (2024)
por: Huang, Han, et al.
Publicado: (2024)
Pore-level Quantitative Structure-Activity Relationship (QSAR) for Water Permeation Rate in Aquaporins
por: Galano-Frutos, Juan José, et al.
Publicado: (2024)
por: Galano-Frutos, Juan José, et al.
Publicado: (2024)
Reshaping Biomolecular Structure Prediction through Strategic Conformational Exploration with HelixFold-S1
por: Liu, Lihang, et al.
Publicado: (2025)
por: Liu, Lihang, et al.
Publicado: (2025)
Consistent Synthetic Sequences Unlock Structural Diversity in Fully Atomistic De Novo Protein Design
por: Reidenbach, Danny, et al.
Publicado: (2025)
por: Reidenbach, Danny, et al.
Publicado: (2025)
Peptide Structure Prediction Using Counter-Diabatic Quantum Approximate Optimization Algorithm (CD-QAOA)
por: Yun, Sung Won, et al.
Publicado: (2026)
por: Yun, Sung Won, et al.
Publicado: (2026)
Fragment and Geometry Aware Tokenization of Molecules for Structure-Based Drug Design Using Language Models
por: Fu, Cong, et al.
Publicado: (2024)
por: Fu, Cong, et al.
Publicado: (2024)
Ejemplares similares
-
Harnessing the 3D‐Beacons Network: A Comprehensive Guide to Accessing and Displaying Protein Structure Data
por: Paulyna Magaña, et al.
Publicado: (2024) -
Describing and Sharing Molecular Visualizations Using the MolViewSpec Toolkit
por: Sebastian Bittrich, et al.
Publicado: (2024) -
From Possibility to Precision in Macromolecular Ensemble Prediction
por: Wankowicz, Stephanie A., et al.
Publicado: (2025) -
ProS2Vi: a Python Tool for Visualizing Proteins Secondary Structure
por: Qasim, Luckman, et al.
Publicado: (2024) -
Undesignable RNA Structure Identification via Rival Structure Generation and Structure Decomposition
por: Zhou, Tianshuo, et al.
Publicado: (2023)