MediViSTA: Medical Video Segmentation via Temporal Fusion SAM Adaptation for Echocardiography
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arXiv
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| Main Authors: | , , , , , , , , , , , |
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| Format: | Preprint |
| Published: |
2023
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| _version_ | 1866913572921016320 |
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| author | Kim, Sekeun Jin, Pengfei Chen, Cheng Kim, Kyungsang Lyu, Zhiliang Ren, Hui Kim, Sunghwan Liu, Zhengliang Zhong, Aoxiao Liu, Tianming Li, Xiang Li, Quanzheng |
| author_facet | Kim, Sekeun Jin, Pengfei Chen, Cheng Kim, Kyungsang Lyu, Zhiliang Ren, Hui Kim, Sunghwan Liu, Zhengliang Zhong, Aoxiao Liu, Tianming Li, Xiang Li, Quanzheng |
| contents | Despite achieving impressive results in general-purpose semantic segmentation with strong generalization on natural images, the Segment Anything Model (SAM) has shown less precision and stability in medical image segmentation. In particular, the original SAM architecture is designed for 2D natural images and is therefore not support to handle three-dimensional information, which is particularly important for medical imaging modalities that are often volumetric or video data. In this paper, we introduce MediViSTA, a parameter-efficient fine-tuning method designed to adapt the vision foundation model for medical video, with a specific focus on echocardiographic segmentation. To achieve spatial adaptation, we propose a frequency feature fusion technique that injects spatial frequency information from a CNN branch. For temporal adaptation, we integrate temporal adapters within the transformer blocks of the image encoder. Using a fine-tuning strategy, only a small subset of pre-trained parameters is updated, allowing efficient adaptation to echocardiographic data. The effectiveness of our method has been comprehensively evaluated on three datasets, comprising two public datasets and one multi-center in-house dataset. Our method consistently outperforms various state-of-the-art approaches without using any prompts. Furthermore, our model exhibits strong generalization capabilities on unseen datasets, surpassing the second-best approach by 2.15\% in Dice and 0.09 in temporal consistency. The results demonstrate the potential of MediViSTA to significantly advance echocardiographical video segmentation, offering improved accuracy and robustness in cardiac assessment applications. |
| format | Preprint |
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arxiv_https___arxiv_org_abs_2309_13539 |
| institution | arXiv |
| publishDate | 2023 |
| record_format | arxiv |
| spellingShingle | MediViSTA: Medical Video Segmentation via Temporal Fusion SAM Adaptation for Echocardiography Kim, Sekeun Jin, Pengfei Chen, Cheng Kim, Kyungsang Lyu, Zhiliang Ren, Hui Kim, Sunghwan Liu, Zhengliang Zhong, Aoxiao Liu, Tianming Li, Xiang Li, Quanzheng Image and Video Processing Despite achieving impressive results in general-purpose semantic segmentation with strong generalization on natural images, the Segment Anything Model (SAM) has shown less precision and stability in medical image segmentation. In particular, the original SAM architecture is designed for 2D natural images and is therefore not support to handle three-dimensional information, which is particularly important for medical imaging modalities that are often volumetric or video data. In this paper, we introduce MediViSTA, a parameter-efficient fine-tuning method designed to adapt the vision foundation model for medical video, with a specific focus on echocardiographic segmentation. To achieve spatial adaptation, we propose a frequency feature fusion technique that injects spatial frequency information from a CNN branch. For temporal adaptation, we integrate temporal adapters within the transformer blocks of the image encoder. Using a fine-tuning strategy, only a small subset of pre-trained parameters is updated, allowing efficient adaptation to echocardiographic data. The effectiveness of our method has been comprehensively evaluated on three datasets, comprising two public datasets and one multi-center in-house dataset. Our method consistently outperforms various state-of-the-art approaches without using any prompts. Furthermore, our model exhibits strong generalization capabilities on unseen datasets, surpassing the second-best approach by 2.15\% in Dice and 0.09 in temporal consistency. The results demonstrate the potential of MediViSTA to significantly advance echocardiographical video segmentation, offering improved accuracy and robustness in cardiac assessment applications. |
| title | MediViSTA: Medical Video Segmentation via Temporal Fusion SAM Adaptation for Echocardiography |
| topic | Image and Video Processing |
| url | https://arxiv.org/abs/2309.13539 |