AtomSurf : Surface Representation for Learning on Protein Structures
Fuente:
arXiv
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| Main Authors: | Mallet, Vincent, Attaiki, Souhaib, Miao, Yangyang, Correia, Bruno, Ovsjanikov, Maks |
|---|---|
| Format: | Preprint |
| Published: |
2023
|
| Subjects: | |
| Online Access: | |
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