Towards Robust Cardiac Segmentation using Graph Convolutional Networks
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arXiv
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| Format: | Preprint |
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2023
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| _version_ | 1866929560025563136 |
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| author | Van De Vyver, Gilles Thomas, Sarina Ben-Yosef, Guy Olaisen, Sindre Hellum Dalen, Håvard Løvstakken, Lasse Smistad, Erik |
| author_facet | Van De Vyver, Gilles Thomas, Sarina Ben-Yosef, Guy Olaisen, Sindre Hellum Dalen, Håvard Løvstakken, Lasse Smistad, Erik |
| contents | Fully automatic cardiac segmentation can be a fast and reproducible method to extract clinical measurements from an echocardiography examination. The U-Net architecture is the current state-of-the-art deep learning architecture for medical segmentation and can segment cardiac structures in real-time with average errors comparable to inter-observer variability. However, this architecture still generates large outliers that are often anatomically incorrect. This work uses the concept of graph convolutional neural networks that predict the contour points of the structures of interest instead of labeling each pixel. We propose a graph architecture that uses two convolutional rings based on cardiac anatomy and show that this eliminates anatomical incorrect multi-structure segmentations on the publicly available CAMUS dataset. Additionally, this work contributes with an ablation study on the graph convolutional architecture and an evaluation of clinical measurements on the clinical HUNT4 dataset. Finally, we propose to use the inter-model agreement of the U-Net and the graph network as a predictor of both the input and segmentation quality. We show this predictor can detect out-of-distribution and unsuitable input images in real-time. Source code is available online: https://github.com/gillesvntnu/GCN_multistructure |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2310_01210 |
| institution | arXiv |
| publishDate | 2023 |
| record_format | arxiv |
| spellingShingle | Towards Robust Cardiac Segmentation using Graph Convolutional Networks Van De Vyver, Gilles Thomas, Sarina Ben-Yosef, Guy Olaisen, Sindre Hellum Dalen, Håvard Løvstakken, Lasse Smistad, Erik Image and Video Processing Computer Vision and Pattern Recognition Machine Learning Fully automatic cardiac segmentation can be a fast and reproducible method to extract clinical measurements from an echocardiography examination. The U-Net architecture is the current state-of-the-art deep learning architecture for medical segmentation and can segment cardiac structures in real-time with average errors comparable to inter-observer variability. However, this architecture still generates large outliers that are often anatomically incorrect. This work uses the concept of graph convolutional neural networks that predict the contour points of the structures of interest instead of labeling each pixel. We propose a graph architecture that uses two convolutional rings based on cardiac anatomy and show that this eliminates anatomical incorrect multi-structure segmentations on the publicly available CAMUS dataset. Additionally, this work contributes with an ablation study on the graph convolutional architecture and an evaluation of clinical measurements on the clinical HUNT4 dataset. Finally, we propose to use the inter-model agreement of the U-Net and the graph network as a predictor of both the input and segmentation quality. We show this predictor can detect out-of-distribution and unsuitable input images in real-time. Source code is available online: https://github.com/gillesvntnu/GCN_multistructure |
| title | Towards Robust Cardiac Segmentation using Graph Convolutional Networks |
| topic | Image and Video Processing Computer Vision and Pattern Recognition Machine Learning |
| url | https://arxiv.org/abs/2310.01210 |