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| Main Authors: | , , , , , , , , , , , , , , , |
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| Format: | Preprint |
| Published: |
2023
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| Subjects: | |
| Online Access: | https://arxiv.org/abs/2311.04215 |
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| _version_ | 1866914875689664512 |
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| author | Corponi, Filippo Li, Bryan M. Anmella, Gerard Valenzuela-Pascual, Clàudia Mas, Ariadna Pacchiarotti, Isabella Valentí, Marc Grande, Iria Benabarre, Antonio Garriga, Marina Vieta, Eduard Young, Allan H Lawrie, Stephen M. Whalley, Heather C. Hidalgo-Mazzei, Diego Vergari, Antonio |
| author_facet | Corponi, Filippo Li, Bryan M. Anmella, Gerard Valenzuela-Pascual, Clàudia Mas, Ariadna Pacchiarotti, Isabella Valentí, Marc Grande, Iria Benabarre, Antonio Garriga, Marina Vieta, Eduard Young, Allan H Lawrie, Stephen M. Whalley, Heather C. Hidalgo-Mazzei, Diego Vergari, Antonio |
| contents | Personal sensing, leveraging data passively and near-continuously collected with wearables from patients in their ecological environment, is a promising paradigm to monitor mood disorders (MDs), a major determinant of worldwide disease burden. However, collecting and annotating wearable data is very resource-intensive. Studies of this kind can thus typically afford to recruit only a couple dozens of patients. This constitutes one of the major obstacles to applying modern supervised machine learning techniques to MDs detection. In this paper, we overcome this data bottleneck and advance the detection of MDs acute episode vs stable state from wearables data on the back of recent advances in self-supervised learning (SSL). This leverages unlabelled data to learn representations during pre-training, subsequently exploited for a supervised task. First, we collected open-access datasets recording with an Empatica E4 spanning different, unrelated to MD monitoring, personal sensing tasks -- from emotion recognition in Super Mario players to stress detection in undergraduates -- and devised a pre-processing pipeline performing on-/off-body detection, sleep-wake detection, segmentation, and (optionally) feature extraction. With 161 E4-recorded subjects, we introduce E4SelfLearning, the largest to date open access collection, and its pre-processing pipeline. Second, we show that SSL confidently outperforms fully-supervised pipelines using either our novel E4-tailored Transformer architecture (E4mer) or classical baseline XGBoost: 81.23% against 75.35% (E4mer) and 72.02% (XGBoost) correctly classified recording segments from 64 (half acute, half stable) patients. Lastly, we illustrate that SSL performance is strongly associated with the specific surrogate task employed for pre-training as well as with unlabelled data availability. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2311_04215 |
| institution | arXiv |
| publishDate | 2023 |
| record_format | arxiv |
| spellingShingle | Wearable data from subjects playing Super Mario, sitting university exams, or performing physical exercise help detect acute mood episodes via self-supervised learning Corponi, Filippo Li, Bryan M. Anmella, Gerard Valenzuela-Pascual, Clàudia Mas, Ariadna Pacchiarotti, Isabella Valentí, Marc Grande, Iria Benabarre, Antonio Garriga, Marina Vieta, Eduard Young, Allan H Lawrie, Stephen M. Whalley, Heather C. Hidalgo-Mazzei, Diego Vergari, Antonio Machine Learning Artificial Intelligence Signal Processing Personal sensing, leveraging data passively and near-continuously collected with wearables from patients in their ecological environment, is a promising paradigm to monitor mood disorders (MDs), a major determinant of worldwide disease burden. However, collecting and annotating wearable data is very resource-intensive. Studies of this kind can thus typically afford to recruit only a couple dozens of patients. This constitutes one of the major obstacles to applying modern supervised machine learning techniques to MDs detection. In this paper, we overcome this data bottleneck and advance the detection of MDs acute episode vs stable state from wearables data on the back of recent advances in self-supervised learning (SSL). This leverages unlabelled data to learn representations during pre-training, subsequently exploited for a supervised task. First, we collected open-access datasets recording with an Empatica E4 spanning different, unrelated to MD monitoring, personal sensing tasks -- from emotion recognition in Super Mario players to stress detection in undergraduates -- and devised a pre-processing pipeline performing on-/off-body detection, sleep-wake detection, segmentation, and (optionally) feature extraction. With 161 E4-recorded subjects, we introduce E4SelfLearning, the largest to date open access collection, and its pre-processing pipeline. Second, we show that SSL confidently outperforms fully-supervised pipelines using either our novel E4-tailored Transformer architecture (E4mer) or classical baseline XGBoost: 81.23% against 75.35% (E4mer) and 72.02% (XGBoost) correctly classified recording segments from 64 (half acute, half stable) patients. Lastly, we illustrate that SSL performance is strongly associated with the specific surrogate task employed for pre-training as well as with unlabelled data availability. |
| title | Wearable data from subjects playing Super Mario, sitting university exams, or performing physical exercise help detect acute mood episodes via self-supervised learning |
| topic | Machine Learning Artificial Intelligence Signal Processing |
| url | https://arxiv.org/abs/2311.04215 |