Determining the optimal structural resolution of proteins through an information-theoretic analysis of their conformational ensemble
Fuente:
arXiv
Guardado en:
| Autores principales: | Mele, Margherita, Fiorentini, Raffaele, Tarenzi, Thomas, Mattiotti, Giovanni, Potestio, Raffaello |
|---|---|
| Formato: | Preprint |
| Publicado: |
2023
|
| Materias: | |
| Acceso en línea: | |
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