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Main Authors: Gogoberidze, Nodar, Cimini, Beth A.
Format: Preprint
Published: 2023
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Online Access:https://arxiv.org/abs/2311.08269
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author Gogoberidze, Nodar
Cimini, Beth A.
author_facet Gogoberidze, Nodar
Cimini, Beth A.
contents Segmentation, or the outlining of objects within images, is a critical step in the measurement and analysis of cells within microscopy images. While improvements continue to be made in tools that rely on classical methods for segmentation, deep learning-based tools increasingly dominate advances in the technology. Specialist models such as Cellpose continue to improve in accuracy and user-friendliness, and segmentation challenges such as the Multi-Modality Cell Segmentation Challenge continue to push innovation in accuracy across widely-varying test data as well as efficiency and usability. Increased attention on documentation, sharing, and evaluation standards are leading to increased user-friendliness and acceleration towards the goal of a truly universal method.
format Preprint
id arxiv_https___arxiv_org_abs_2311_08269
institution arXiv
publishDate 2023
record_format arxiv
spellingShingle Defining the boundaries: challenges and advances in identifying cells in microscopy images
Gogoberidze, Nodar
Cimini, Beth A.
Quantitative Methods
Computer Vision and Pattern Recognition
Segmentation, or the outlining of objects within images, is a critical step in the measurement and analysis of cells within microscopy images. While improvements continue to be made in tools that rely on classical methods for segmentation, deep learning-based tools increasingly dominate advances in the technology. Specialist models such as Cellpose continue to improve in accuracy and user-friendliness, and segmentation challenges such as the Multi-Modality Cell Segmentation Challenge continue to push innovation in accuracy across widely-varying test data as well as efficiency and usability. Increased attention on documentation, sharing, and evaluation standards are leading to increased user-friendliness and acceleration towards the goal of a truly universal method.
title Defining the boundaries: challenges and advances in identifying cells in microscopy images
topic Quantitative Methods
Computer Vision and Pattern Recognition
url https://arxiv.org/abs/2311.08269