Undesignable RNA Structure Identification via Rival Structure Generation and Structure Decomposition
Fuente:
arXiv
Saved in:
| Main Authors: | Zhou, Tianshuo, Tang, Wei Yu, Mathews, David H., Huang, Liang |
|---|---|
| Format: | Preprint |
| Published: |
2023
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Fast and Versatile RNA Design via Motif-level Divide-and-Conquer and Structure-level Rival Search
by: Zhou, Tianshuo, et al.
Published: (2026)
by: Zhou, Tianshuo, et al.
Published: (2026)
Sampling-based Continuous Optimization for Messenger RNA Design
by: Yue, Feipeng, et al.
Published: (2026)
by: Yue, Feipeng, et al.
Published: (2026)
Messenger RNA Design via Expected Partition Function and Continuous Optimization
by: Dai, Ning, et al.
Published: (2023)
by: Dai, Ning, et al.
Published: (2023)
Sampling-based Continuous Optimization with Coupled Variables for RNA Design
by: Tang, Wei Yu, et al.
Published: (2024)
by: Tang, Wei Yu, et al.
Published: (2024)
Scalable and Interpretable Identification of Minimal Undesignable RNA Structure Motifs with Rotational Invariance
by: Zhou, Tianshuo, et al.
Published: (2024)
by: Zhou, Tianshuo, et al.
Published: (2024)
RiboDiffusion: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models
by: Huang, Han, et al.
Published: (2024)
by: Huang, Han, et al.
Published: (2024)
RiboPO: Preference Optimization for Structure- and Stability-Aware RNA Design
by: Sun, Minghao, et al.
Published: (2025)
by: Sun, Minghao, et al.
Published: (2025)
LinearAlifold: Linear-Time Consensus Structure Prediction for RNA Alignments
by: Malik, Apoorv, et al.
Published: (2022)
by: Malik, Apoorv, et al.
Published: (2022)
Rethinking Performance Measures of RNA Secondary Structure Problems
by: Runge, Frederic, et al.
Published: (2023)
by: Runge, Frederic, et al.
Published: (2023)
Algorithm for Optimized mRNA Design Improves Stability and Immunogenicity
by: Zhang, He, et al.
Published: (2020)
by: Zhang, He, et al.
Published: (2020)
RiboGen: RNA Sequence and Structure Co-Generation with Equivariant MultiFlow
by: Rubin, Dana, et al.
Published: (2025)
by: Rubin, Dana, et al.
Published: (2025)
LinearPartition: Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities
by: Zhang, He, et al.
Published: (2019)
by: Zhang, He, et al.
Published: (2019)
SeedFold: Scaling Biomolecular Structure Prediction
by: Zhou, Yi, et al.
Published: (2025)
by: Zhou, Yi, et al.
Published: (2025)
mRNA Folding Algorithms for Structure and Codon Optimization
by: Ward, Max, et al.
Published: (2025)
by: Ward, Max, et al.
Published: (2025)
RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
by: Nori, Divya, et al.
Published: (2024)
by: Nori, Divya, et al.
Published: (2024)
RiNALMo: General-Purpose RNA Language Models Can Generalize Well on Structure Prediction Tasks
by: Penić, Rafael Josip, et al.
Published: (2024)
by: Penić, Rafael Josip, et al.
Published: (2024)
Structure Language Models for Protein Conformation Generation
by: Lu, Jiarui, et al.
Published: (2024)
by: Lu, Jiarui, et al.
Published: (2024)
Protein FID: Improved Evaluation of Protein Structure Generative Models
by: Faltings, Felix, et al.
Published: (2025)
by: Faltings, Felix, et al.
Published: (2025)
Fast and Accurate Antibody Sequence Design via Structure Retrieval
by: Zhang, Xingyi, et al.
Published: (2025)
by: Zhang, Xingyi, et al.
Published: (2025)
A Comprehensive Benchmark for RNA 3D Structure-Function Modeling
by: Wyss, Luis, et al.
Published: (2025)
by: Wyss, Luis, et al.
Published: (2025)
A New Route for the Determination of Protein Structure and Function
by: Mejias, S. H., et al.
Published: (2024)
by: Mejias, S. H., et al.
Published: (2024)
ProtComposer: Compositional Protein Structure Generation with 3D Ellipsoids
by: Stark, Hannes, et al.
Published: (2025)
by: Stark, Hannes, et al.
Published: (2025)
Learning Protein Structure-Function Relationships through Knowledge-guided Representation Decomposition
by: Wang, Mingqing, et al.
Published: (2026)
by: Wang, Mingqing, et al.
Published: (2026)
Pushing the boundaries of Structure-Based Drug Design through Collaboration with Large Language Models
by: Gao, Bowen, et al.
Published: (2025)
by: Gao, Bowen, et al.
Published: (2025)
Learning Structure, Energy, and Dynamics: A Survey of Artificial Intelligence for Protein Dynamics
by: Tang, Haocheng, et al.
Published: (2026)
by: Tang, Haocheng, et al.
Published: (2026)
DecompOpt: Controllable and Decomposed Diffusion Models for Structure-based Molecular Optimization
by: Zhou, Xiangxin, et al.
Published: (2024)
by: Zhou, Xiangxin, et al.
Published: (2024)
An Energy-Adaptive Elastic Equivariant Transformer Framework for Protein Structure Representation
by: Zhang, Zhongyue, et al.
Published: (2025)
by: Zhang, Zhongyue, et al.
Published: (2025)
Binding-Adaptive Diffusion Models for Structure-Based Drug Design
by: Huang, Zhilin, et al.
Published: (2024)
by: Huang, Zhilin, et al.
Published: (2024)
Consistent Synthetic Sequences Unlock Structural Diversity in Fully Atomistic De Novo Protein Design
by: Reidenbach, Danny, et al.
Published: (2025)
by: Reidenbach, Danny, et al.
Published: (2025)
Structure-Based Drug Design via 3D Molecular Generative Pre-training and Sampling
by: Yang, Yuwei, et al.
Published: (2024)
by: Yang, Yuwei, et al.
Published: (2024)
Deep Lead Optimization: Leveraging Generative AI for Structural Modification
by: Zhang, Odin, et al.
Published: (2024)
by: Zhang, Odin, et al.
Published: (2024)
Systems-Structure-Based Drug Design
by: Zaballa, Vincent D., et al.
Published: (2024)
by: Zaballa, Vincent D., et al.
Published: (2024)
Integrating Protein Dynamics into Structure-Based Drug Design via Full-Atom Stochastic Flows
by: Zhou, Xiangxin, et al.
Published: (2025)
by: Zhou, Xiangxin, et al.
Published: (2025)
IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction
by: The IntFold Team, et al.
Published: (2025)
by: The IntFold Team, et al.
Published: (2025)
GoForth: Language Models for RNA Design under Structure, Sequence, and Coding Constraints
by: Lindsey, Michael
Published: (2026)
by: Lindsey, Michael
Published: (2026)
ZeroFold: Protein-RNA Binding Affinity Predictions from Pre-Structural Embeddings
by: Hanke, Josef, et al.
Published: (2026)
by: Hanke, Josef, et al.
Published: (2026)
PDBImages: A Command Line Tool for Automated Macromolecular Structure Visualization
by: Midlik, Adam, et al.
Published: (2023)
by: Midlik, Adam, et al.
Published: (2023)
RNA Secondary Structure Prediction Using Transformer-Based Deep Learning Models
by: Zhou, Yanlin, et al.
Published: (2024)
by: Zhou, Yanlin, et al.
Published: (2024)
Methods for Secondary and Tertiary Structure Prediction of Microproteins
by: Facelli, Julio C.
Published: (2025)
by: Facelli, Julio C.
Published: (2025)
Structure-Informed Protein Language Model
by: Zhang, Zuobai, et al.
Published: (2024)
by: Zhang, Zuobai, et al.
Published: (2024)
Similar Items
-
Fast and Versatile RNA Design via Motif-level Divide-and-Conquer and Structure-level Rival Search
by: Zhou, Tianshuo, et al.
Published: (2026) -
Sampling-based Continuous Optimization for Messenger RNA Design
by: Yue, Feipeng, et al.
Published: (2026) -
Messenger RNA Design via Expected Partition Function and Continuous Optimization
by: Dai, Ning, et al.
Published: (2023) -
Sampling-based Continuous Optimization with Coupled Variables for RNA Design
by: Tang, Wei Yu, et al.
Published: (2024) -
Scalable and Interpretable Identification of Minimal Undesignable RNA Structure Motifs with Rotational Invariance
by: Zhou, Tianshuo, et al.
Published: (2024)