Sweetwater: An interpretable and adaptive autoencoder for efficient tissue deconvolution
Fuente:
arXiv
Saved in:
| Main Authors: | de la Fuente, Jesus, Legarra, Naroa, Serrano, Guillermo, Marin-Goni, Irene, Diaz-Mazkiaran, Aintzane, Sendin, Markel Benito, Osta, Ana Garcia, Kalari, Krishna R., Fernandez-Granda, Carlos, Ochoa, Idoia, Hernaez, Mikel |
|---|---|
| Format: | Preprint |
| Published: |
2023
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
scMEDAL for the interpretable analysis of single-cell transcriptomics data with batch effect visualization using a deep mixed effects autoencoder
by: Andrade, Aixa X., et al.
Published: (2024)
by: Andrade, Aixa X., et al.
Published: (2024)
Integrating spatially-resolved transcriptomics data across tissues and individuals: challenges and opportunities
by: Guo, Boyi, et al.
Published: (2024)
by: Guo, Boyi, et al.
Published: (2024)
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods
by: Consortium, The Critical Assessment of Genome Interpretation
Published: (2022)
by: Consortium, The Critical Assessment of Genome Interpretation
Published: (2022)
Genomic signatures of speciation and adaptation in the ctenophore Mnemiopsis.
by: Ketchum, Remi N, et al.
Published: (2026)
by: Ketchum, Remi N, et al.
Published: (2026)
How chromatin interactions shed light on interpreting non-coding genomic variants: opportunities and future direc-tions
by: Liang, Yuheng, et al.
Published: (2024)
by: Liang, Yuheng, et al.
Published: (2024)
Multi-modal single-cell foundation models via dynamic token adaptation
by: Zhao, Wenmin, et al.
Published: (2025)
by: Zhao, Wenmin, et al.
Published: (2025)
Active learning for efficient discovery of optimal gene combinations in the combinatorial perturbation space
by: Qin, Jason, et al.
Published: (2024)
by: Qin, Jason, et al.
Published: (2024)
A mechanistically interpretable neural network for regulatory genomics
by: Tseng, Alex M., et al.
Published: (2024)
by: Tseng, Alex M., et al.
Published: (2024)
CAVACHON: a hierarchical variational autoencoder to integrate multi-modal single-cell data
by: Hsieh, Ping-Han, et al.
Published: (2024)
by: Hsieh, Ping-Han, et al.
Published: (2024)
Radiation with reproductive isolation in the near-absence of phylogenetic signal.
by: Helmkampf, Martin, et al.
Published: (2025)
by: Helmkampf, Martin, et al.
Published: (2025)
Multi-megabase scale genome interpretation with genetic language models
by: Träuble, Frederik, et al.
Published: (2025)
by: Träuble, Frederik, et al.
Published: (2025)
Partial domain adaptation enables cross domain cell type annotation between scRNA-seq and snRNA-seq
by: Chen, Xiran, et al.
Published: (2025)
by: Chen, Xiran, et al.
Published: (2025)
Lift&Add
by: Shukla, Navya, et al.
Published: (2026)
by: Shukla, Navya, et al.
Published: (2026)
History and current status of embryogenic culture‐based tissue culture, transformation and gene editing of maize ( Zea mays L.)
by: Frank L. McFarland, et al.
Published: (2024)
by: Frank L. McFarland, et al.
Published: (2024)
A Chromosome-level Assembly and Functional Genomic Resources for the Model Annelid Capitella teleta.
by: Davies, Billie E, et al.
Published: (2026)
by: Davies, Billie E, et al.
Published: (2026)
Chromosome‐level genome of Zoysia sinica in the intertidal zone reveals genomic insights into waterlogging stress adaptation
by: Hyeonseon Park, et al.
Published: (2025)
by: Hyeonseon Park, et al.
Published: (2025)
Machine Learning for analysis of Multiple Sclerosis cross-tissue bulk and single-cell transcriptomics data
by: Massafra, Francesco, et al.
Published: (2026)
by: Massafra, Francesco, et al.
Published: (2026)
A novel allele of Days to Heading 8 promotes heading, potentially widening indica rice adaptation in Japan
by: Lam Thi Dinh, et al.
Published: (2025)
by: Lam Thi Dinh, et al.
Published: (2025)
Primer C-VAE: An interpretable deep learning primer design method to detect emerging virus variants
by: Wang, Hanyu, et al.
Published: (2025)
by: Wang, Hanyu, et al.
Published: (2025)
HEK-Omics: The promise of omics to optimize HEK293 for recombinant adeno-associated virus (rAAV) gene therapy manufacturing
by: Gurazada, Sai Guna Ranjan, et al.
Published: (2024)
by: Gurazada, Sai Guna Ranjan, et al.
Published: (2024)
Genetic dissection of the root system architecture QTLome and its relationship with early shoot development, breeding and adaptation in durum wheat
by: Giuseppe Sciara, et al.
Published: (2025)
by: Giuseppe Sciara, et al.
Published: (2025)
Chromosomal rearrangements and transposable elements in locally adapted island Drosophila
by: Turner, Brandon A., et al.
Published: (2021)
by: Turner, Brandon A., et al.
Published: (2021)
Supplementary information for "Factors influencing the accuracy and precision in dating single gene trees"
by: Louvel, Guillaume, et al.
Published: (2024)
by: Louvel, Guillaume, et al.
Published: (2024)
Systematic evaluation of the isolated effect of tissue environment on the transcriptome using a single-cell RNA-seq atlas dataset
by: Okada, Daigo, et al.
Published: (2024)
by: Okada, Daigo, et al.
Published: (2024)
Lightning-fast adaptive immune receptor similarity search by symmetric deletion lookup
by: Chotisorayuth, Touchchai, et al.
Published: (2024)
by: Chotisorayuth, Touchchai, et al.
Published: (2024)
Genetic mapping and haplotype analysis identify novel candidate genes for high night temperature tolerance in winter wheat
by: Dinesh Kumar Saini, et al.
Published: (2025)
by: Dinesh Kumar Saini, et al.
Published: (2025)
Sparse autoencoders reveal organized biological knowledge but minimal regulatory logic in single-cell foundation models: a comparative atlas of Geneformer and scGPT
by: Kendiukhov, Ihor
Published: (2026)
by: Kendiukhov, Ihor
Published: (2026)
Enhancing prediction accuracy of grain yield in wheat lines adapted to the southeastern United States through multivariate and multi‐environment genomic prediction models incorporating spectral and thermal information
by: Jordan McBreen, et al.
Published: (2024)
by: Jordan McBreen, et al.
Published: (2024)
Reference genome for the benthic marine diatom Psammoneis japonica: Bacterial associations and repeat-driven genome size evolution in diatoms.
by: Roberts, Wade R, et al.
Published: (2025)
by: Roberts, Wade R, et al.
Published: (2025)
Population and herbarium genomics provide a comprehensive framework for a revision of Microcoleus (Cyanobacteria).
by: Skoupý, Svatopluk, et al.
Published: (2026)
by: Skoupý, Svatopluk, et al.
Published: (2026)
SAGE-FM: A lightweight and interpretable spatial transcriptomics foundation model
by: Zhan, Xianghao, et al.
Published: (2026)
by: Zhan, Xianghao, et al.
Published: (2026)
Polyphasic characterization and genomic insights of the cyanobacteria Aphanothece microscopica and A. stagnina from Southern Brazil with emphasis on fatty acid biosynthesis.
by: Delgado, Ronald Tarazona, et al.
Published: (2025)
by: Delgado, Ronald Tarazona, et al.
Published: (2025)
The amphipod genome reveals population dynamics and adaptations to hadal environment.
by: Zhang, Haibin, et al.
Published: (2025)
by: Zhang, Haibin, et al.
Published: (2025)
Ecological interactions and genomic innovation fueled the evolution of ray-finned fish endothermy.
by: Melendez-Vazquez, Fernando, et al.
Published: (2025)
by: Melendez-Vazquez, Fernando, et al.
Published: (2025)
$Γ$-VAE: Curvature regularized variational autoencoders for uncovering emergent low dimensional geometric structure in high dimensional data
by: Kim, Jason Z., et al.
Published: (2024)
by: Kim, Jason Z., et al.
Published: (2024)
Two genomes of the white perch (Morone americana), an ecologically important teleost.
by: Paris, Josephine R, et al.
Published: (2025)
by: Paris, Josephine R, et al.
Published: (2025)
Genome sequence of a marine threespine stickleback (Gasterosteus aculeatus) from Rabbit Slough in the Cook Inlet.
by: Au, Eric H, et al.
Published: (2025)
by: Au, Eric H, et al.
Published: (2025)
Complete genome sequence of the marine mangrove fungus Sarcopodium sp.QM3-1 confirmed its high potential for antimicrobial activity.
by: Zhang, Wenzhou, et al.
Published: (2025)
by: Zhang, Wenzhou, et al.
Published: (2025)
Complete genome sequence of Lysinibacillus sp. WB86, a potential antimicrobial lanthipeptides producer.
by: Sun, Huai-Ying, et al.
Published: (2025)
by: Sun, Huai-Ying, et al.
Published: (2025)
Covering All Bases: A Universal Metazoan UCE Probe Set to Democratize Phylogenomics.
by: Derkarabetian, Shahan, et al.
Published: (2025)
by: Derkarabetian, Shahan, et al.
Published: (2025)
Similar Items
-
scMEDAL for the interpretable analysis of single-cell transcriptomics data with batch effect visualization using a deep mixed effects autoencoder
by: Andrade, Aixa X., et al.
Published: (2024) -
Integrating spatially-resolved transcriptomics data across tissues and individuals: challenges and opportunities
by: Guo, Boyi, et al.
Published: (2024) -
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods
by: Consortium, The Critical Assessment of Genome Interpretation
Published: (2022) -
Genomic signatures of speciation and adaptation in the ctenophore Mnemiopsis.
by: Ketchum, Remi N, et al.
Published: (2026) -
How chromatin interactions shed light on interpreting non-coding genomic variants: opportunities and future direc-tions
by: Liang, Yuheng, et al.
Published: (2024)