Saved in:
| Main Authors: | Toader, Bogdan, Brubaker, Marcus A., Lederman, Roy R. |
|---|---|
| Format: | Preprint |
| Published: |
2023
|
| Subjects: | |
| Online Access: | https://arxiv.org/abs/2311.16100 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
cryoSPHERE: Single-particle heterogeneous reconstruction from cryo EM
by: Ducrocq, Gabriel, et al.
Published: (2024)
by: Ducrocq, Gabriel, et al.
Published: (2024)
Community recommendations on cryoEM data archiving and validation
by: Kleywegt, Gerard J., et al.
Published: (2023)
by: Kleywegt, Gerard J., et al.
Published: (2023)
Gaussian-convolution-invariant shell approximation to spherically-symmetric functions
by: Urzhumtsev, Alexandre G., et al.
Published: (2024)
by: Urzhumtsev, Alexandre G., et al.
Published: (2024)
CowScape: Quantitative reconstruction of the conformational landscape of biological macromolecules from cryo-EM data
by: Lambrecht, Felix, et al.
Published: (2024)
by: Lambrecht, Felix, et al.
Published: (2024)
Effect of Electric Charge on Biotherapeutic Transport, Binding and Absorption: A Computational Study
by: de Lucio, Mario, et al.
Published: (2026)
by: de Lucio, Mario, et al.
Published: (2026)
Multiscale guidance of protein structure prediction with heterogeneous cryo-EM data
by: Raghu, Rishwanth, et al.
Published: (2025)
by: Raghu, Rishwanth, et al.
Published: (2025)
CryoDyna: Multiscale end-to-end modeling of cryo-EM macromolecule dynamics with physics-aware neural network
by: Zhang, Chengwei, et al.
Published: (2025)
by: Zhang, Chengwei, et al.
Published: (2025)
Moment-based metrics for molecules computable from cryo-EM images
by: Zhang, Andy, et al.
Published: (2024)
by: Zhang, Andy, et al.
Published: (2024)
Struc2mapGAN: improving synthetic cryo-EM density maps with generative adversarial networks
by: Zhang, Chenwei, et al.
Published: (2024)
by: Zhang, Chenwei, et al.
Published: (2024)
Towards better structural models from cryo-electron microscopy data with physics-based methods
by: Selcuk, Hande Boyaci, et al.
Published: (2025)
by: Selcuk, Hande Boyaci, et al.
Published: (2025)
Conformational landscapes in cryo-ET data based on MD simulations
by: Jonic, Slavica
Published: (2026)
by: Jonic, Slavica
Published: (2026)
A Nonlocal size modified Poisson-Boltzmann Model and Its Finite Element Solver for Protein in Multi-Species Ionic Solution
by: Xie, Dexuan, et al.
Published: (2025)
by: Xie, Dexuan, et al.
Published: (2025)
Hanke-Raus heuristic rule for iteratively regularized stochastic gradient descent
by: Bajpai, Harshit, et al.
Published: (2024)
by: Bajpai, Harshit, et al.
Published: (2024)
A stochastic column-block gradient descent method for solving nonlinear systems of equations
by: Jiang, Naiyu, et al.
Published: (2025)
by: Jiang, Naiyu, et al.
Published: (2025)
Numerical approximation of McKean-Vlasov SDEs via stochastic gradient descent
by: Agarwal, Ankush, et al.
Published: (2023)
by: Agarwal, Ankush, et al.
Published: (2023)
cryoSENSE: Compressive Sensing Enables High-throughput Microscopy with Sparse and Generative Priors on the Protein Cryo-EM Image Manifold
by: Shabeeb, Zain, et al.
Published: (2025)
by: Shabeeb, Zain, et al.
Published: (2025)
PERC: a suite of software tools for the curation of cryoEM data with application to simulation, modelling and machine learning
by: Costa-Gomes, Beatriz, et al.
Published: (2025)
by: Costa-Gomes, Beatriz, et al.
Published: (2025)
Riemannian gradient descent for spherical area-preserving mappings
by: Sutti, Marco, et al.
Published: (2024)
by: Sutti, Marco, et al.
Published: (2024)
Flattened one-bit stochastic gradient descent: compressed distributed optimization with controlled variance
by: Stollenwerk, Alexander, et al.
Published: (2024)
by: Stollenwerk, Alexander, et al.
Published: (2024)
Geometric shape matching for recovering protein conformations from single-particle Cryo-EM data
by: Jansson, Erik, et al.
Published: (2024)
by: Jansson, Erik, et al.
Published: (2024)
Stochastic gradient descent in continuous time for drift identification in multiscale diffusions
by: Hirsch, Max, et al.
Published: (2024)
by: Hirsch, Max, et al.
Published: (2024)
Phase Transitions in Unsupervised Feature Selection
by: Fiorentino, Jonathan, et al.
Published: (2026)
by: Fiorentino, Jonathan, et al.
Published: (2026)
Subspace method of moments for ab initio 3-D single-particle cryo-EM reconstruction
by: Hoskins, Jeremy, et al.
Published: (2024)
by: Hoskins, Jeremy, et al.
Published: (2024)
CryoBench: Diverse and challenging datasets for the heterogeneity problem in cryo-EM
by: Jeon, Minkyu, et al.
Published: (2024)
by: Jeon, Minkyu, et al.
Published: (2024)
Stochastic gradient descent based variational inference for infinite-dimensional inverse problems
by: Sui, Jiaming, et al.
Published: (2025)
by: Sui, Jiaming, et al.
Published: (2025)
Stochastic gradient descent method with convex penalty for ill-posed problems in Banach spaces
by: Gu, Ruixue, et al.
Published: (2024)
by: Gu, Ruixue, et al.
Published: (2024)
On the mean-field limit for Stein variational gradient descent: stability and multilevel approximation
by: Weissmann, Simon, et al.
Published: (2024)
by: Weissmann, Simon, et al.
Published: (2024)
PROflow: An iterative refinement model for PROTAC-induced structure prediction
by: Qiang, Bo, et al.
Published: (2024)
by: Qiang, Bo, et al.
Published: (2024)
Hamiltonian Monte Carlo methods for spectroscopy data analysis
by: McBride, Daniel, et al.
Published: (2024)
by: McBride, Daniel, et al.
Published: (2024)
Quadrature rules for splines of high smoothness on uniformly refined triangles
by: Eddargani, Salah, et al.
Published: (2024)
by: Eddargani, Salah, et al.
Published: (2024)
A perturbed preconditioned gradient descent method for the unconstrained minimization of composite objectives
by: Park, Jea-Hyun, et al.
Published: (2025)
by: Park, Jea-Hyun, et al.
Published: (2025)
De novo design of high-affinity protein binders with AlphaProteo
by: Zambaldi, Vinicius, et al.
Published: (2024)
by: Zambaldi, Vinicius, et al.
Published: (2024)
Active Causal Learning for Decoding Chemical Complexities with Targeted Interventions
by: Fox, Zachary R., et al.
Published: (2024)
by: Fox, Zachary R., et al.
Published: (2024)
SOLVAR: Fast covariance-based heterogeneity analysis with pose refinement for cryo-EM
by: Yadgar, Roey, et al.
Published: (2026)
by: Yadgar, Roey, et al.
Published: (2026)
Extending h adaptivity with refinement patterns
by: Avancini, Giovane, et al.
Published: (2024)
by: Avancini, Giovane, et al.
Published: (2024)
AutoLoop: a novel autoregressive deep learning method for protein loop prediction with high accuracy
by: Wang, Tianyue, et al.
Published: (2025)
by: Wang, Tianyue, et al.
Published: (2025)
Learning rate adaptive stochastic gradient descent optimization methods: numerical simulations for deep learning methods for partial differential equations and convergence analyses
by: Dereich, Steffen, et al.
Published: (2024)
by: Dereich, Steffen, et al.
Published: (2024)
An Efficient Algorithm for Exploring RNA Branching Conformations under the Nearest-Neighbor Thermodynamic Model
by: Poznanović, Svetlana, et al.
Published: (2025)
by: Poznanović, Svetlana, et al.
Published: (2025)
Chemistry42: An AI-based platform for de novo molecular design
by: Ivanenkov, Yan A., et al.
Published: (2021)
by: Ivanenkov, Yan A., et al.
Published: (2021)
Quadratic unconstrained binary optimization and constraint programming approaches for lattice-based cyclic peptide docking
by: Brubaker, J. Kyle, et al.
Published: (2024)
by: Brubaker, J. Kyle, et al.
Published: (2024)
Similar Items
-
cryoSPHERE: Single-particle heterogeneous reconstruction from cryo EM
by: Ducrocq, Gabriel, et al.
Published: (2024) -
Community recommendations on cryoEM data archiving and validation
by: Kleywegt, Gerard J., et al.
Published: (2023) -
Gaussian-convolution-invariant shell approximation to spherically-symmetric functions
by: Urzhumtsev, Alexandre G., et al.
Published: (2024) -
CowScape: Quantitative reconstruction of the conformational landscape of biological macromolecules from cryo-EM data
by: Lambrecht, Felix, et al.
Published: (2024) -
Effect of Electric Charge on Biotherapeutic Transport, Binding and Absorption: A Computational Study
by: de Lucio, Mario, et al.
Published: (2026)