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| Format: | Preprint |
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2023
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| Online-Zugang: | https://arxiv.org/abs/2312.14435 |
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| _version_ | 1866909188338221056 |
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| author | Kamimura, Atsushi Sughiyama, Yuki Kobayashi, Tetsuya J. |
| author_facet | Kamimura, Atsushi Sughiyama, Yuki Kobayashi, Tetsuya J. |
| contents | We delve into growing open chemical reaction systems (CRSs) characterized by autocatalytic reactions within a variable volume, which changes in response to these reactions. Understanding the thermodynamics of such systems is crucial for comprehending biological cells and constructing protocells, as it sheds light on the physical conditions necessary for their self-replication. Building on our recent work, where we developed a thermodynamic theory for growing CRSs featuring basic autocatalytic motifs with regular stoichiometric matrices, we now expand this theory to include scenarios where the stoichiometric matrix has a nontrivial left kernel space. This extension introduces conservation laws, which limit the variations in chemical species due to reactions, thereby confining the system's possible states to those compatible with its initial conditions. By considering both thermodynamic and stoichiometric constraints, we clarify the environmental and initial conditions that dictate the CRSs' fate-whether they grow, shrink, or reach equilibrium. We also find that the conserved quantities significantly influence the equilibrium state achieved by a growing CRS. These results are derived independently of specific thermodynamic potentials or reaction kinetics, therefore underscoring the fundamental impact of conservation laws on the growth of the system. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2312_14435 |
| institution | arXiv |
| publishDate | 2023 |
| record_format | arxiv |
| spellingShingle | Thermodynamic and Stoichiometric Laws Ruling the Fates of Growing Systems Kamimura, Atsushi Sughiyama, Yuki Kobayashi, Tetsuya J. Statistical Mechanics Biological Physics Chemical Physics We delve into growing open chemical reaction systems (CRSs) characterized by autocatalytic reactions within a variable volume, which changes in response to these reactions. Understanding the thermodynamics of such systems is crucial for comprehending biological cells and constructing protocells, as it sheds light on the physical conditions necessary for their self-replication. Building on our recent work, where we developed a thermodynamic theory for growing CRSs featuring basic autocatalytic motifs with regular stoichiometric matrices, we now expand this theory to include scenarios where the stoichiometric matrix has a nontrivial left kernel space. This extension introduces conservation laws, which limit the variations in chemical species due to reactions, thereby confining the system's possible states to those compatible with its initial conditions. By considering both thermodynamic and stoichiometric constraints, we clarify the environmental and initial conditions that dictate the CRSs' fate-whether they grow, shrink, or reach equilibrium. We also find that the conserved quantities significantly influence the equilibrium state achieved by a growing CRS. These results are derived independently of specific thermodynamic potentials or reaction kinetics, therefore underscoring the fundamental impact of conservation laws on the growth of the system. |
| title | Thermodynamic and Stoichiometric Laws Ruling the Fates of Growing Systems |
| topic | Statistical Mechanics Biological Physics Chemical Physics |
| url | https://arxiv.org/abs/2312.14435 |