Molecular chirality quantification: Tools and benchmarks
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arXiv
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| Main Authors: | , |
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| Format: | Preprint |
| Published: |
2024
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| _version_ | 1866910717273178112 |
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| author | Abraham, Ethan Nitzan, Abraham |
| author_facet | Abraham, Ethan Nitzan, Abraham |
| contents | Molecular chirality has traditionally been viewed as a binary property where a molecule is classified as either chiral or achiral, yet in the recent decades mathematical methods for quantifying chirality have been explored. Here we use toy molecular systems to systematically compare the performance of two state of the art chirality measures (1) the Continuous Chirality Measure (CCM) and (2) the Chirality Characteristic ($χ$). We find that both methods exhibit qualitatively similar behavior when applied to simple molecular systems such as a four-site molecule or the polymer double-helix, but we show that the CCM may be more suitable for evaluating the chirality of arbitrary molecules or abstract structures such as normal vibrational modes. We discuss a range of considerations for applying these methods to molecular systems in general, and we provide links to user-friendly codes for both methods. We aim this paper to serve as a concise resource for scientists attempting to familiarize themselves with these chirality measures or attempting to implement chirality measures in their own work. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2401_08114 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Molecular chirality quantification: Tools and benchmarks Abraham, Ethan Nitzan, Abraham Chemical Physics Soft Condensed Matter Molecular chirality has traditionally been viewed as a binary property where a molecule is classified as either chiral or achiral, yet in the recent decades mathematical methods for quantifying chirality have been explored. Here we use toy molecular systems to systematically compare the performance of two state of the art chirality measures (1) the Continuous Chirality Measure (CCM) and (2) the Chirality Characteristic ($χ$). We find that both methods exhibit qualitatively similar behavior when applied to simple molecular systems such as a four-site molecule or the polymer double-helix, but we show that the CCM may be more suitable for evaluating the chirality of arbitrary molecules or abstract structures such as normal vibrational modes. We discuss a range of considerations for applying these methods to molecular systems in general, and we provide links to user-friendly codes for both methods. We aim this paper to serve as a concise resource for scientists attempting to familiarize themselves with these chirality measures or attempting to implement chirality measures in their own work. |
| title | Molecular chirality quantification: Tools and benchmarks |
| topic | Chemical Physics Soft Condensed Matter |
| url | https://arxiv.org/abs/2401.08114 |