Siamese Content-based Search Engine for a More Transparent Skin and Breast Cancer Diagnosis through Histological Imaging
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arXiv
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| Autores principales: | , , , |
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| Formato: | Preprint |
| Publicado: |
2024
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| _version_ | 1866915607606198272 |
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| author | Tabatabaei, Zahra Colomer, Adrián Moll, JAvier Oliver Naranjo, Valery |
| author_facet | Tabatabaei, Zahra Colomer, Adrián Moll, JAvier Oliver Naranjo, Valery |
| contents | Computer Aid Diagnosis (CAD) has developed digital pathology with Deep Learning (DL)-based tools to assist pathologists in decision-making. Content-Based Histopathological Image Retrieval (CBHIR) is a novel tool to seek highly correlated patches in terms of similarity in histopathological features. In this work, we proposed two CBHIR approaches on breast (Breast-twins) and skin cancer (Skin-twins) data sets for robust and accurate patch-level retrieval, integrating a custom-built Siamese network as a feature extractor. The proposed Siamese network is able to generalize for unseen images by focusing on the similar histopathological features of the input pairs. The proposed CBHIR approaches are evaluated on the Breast (public) and Skin (private) data sets with top K accuracy. Finding the optimum amount of K is challenging, but also, as much as K increases, the dissimilarity between the query and the returned images increases which might mislead the pathologists. To the best of the author's belief, this paper is tackling this issue for the first time on histopathological images by evaluating the top first retrieved images. The Breast-twins model achieves 70% of the F1score at the top first, which exceeds the other state-of-the-art methods at a higher amount of K such as 5 and 400. Skin-twins overpasses the recently proposed Convolutional Auto Encoder (CAE) by 67%, increasing the precision. Besides, the Skin-twins model tackles the challenges of Spitzoid Tumors of Uncertain Malignant Potential (STUMP) to assist pathologists with retrieving top K images and their corresponding labels. So, this approach can offer a more explainable CAD tool to pathologists in terms of transparency, trustworthiness, or reliability among other characteristics. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2401_08272 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Siamese Content-based Search Engine for a More Transparent Skin and Breast Cancer Diagnosis through Histological Imaging Tabatabaei, Zahra Colomer, Adrián Moll, JAvier Oliver Naranjo, Valery Computer Vision and Pattern Recognition Information Retrieval Machine Learning Computer Aid Diagnosis (CAD) has developed digital pathology with Deep Learning (DL)-based tools to assist pathologists in decision-making. Content-Based Histopathological Image Retrieval (CBHIR) is a novel tool to seek highly correlated patches in terms of similarity in histopathological features. In this work, we proposed two CBHIR approaches on breast (Breast-twins) and skin cancer (Skin-twins) data sets for robust and accurate patch-level retrieval, integrating a custom-built Siamese network as a feature extractor. The proposed Siamese network is able to generalize for unseen images by focusing on the similar histopathological features of the input pairs. The proposed CBHIR approaches are evaluated on the Breast (public) and Skin (private) data sets with top K accuracy. Finding the optimum amount of K is challenging, but also, as much as K increases, the dissimilarity between the query and the returned images increases which might mislead the pathologists. To the best of the author's belief, this paper is tackling this issue for the first time on histopathological images by evaluating the top first retrieved images. The Breast-twins model achieves 70% of the F1score at the top first, which exceeds the other state-of-the-art methods at a higher amount of K such as 5 and 400. Skin-twins overpasses the recently proposed Convolutional Auto Encoder (CAE) by 67%, increasing the precision. Besides, the Skin-twins model tackles the challenges of Spitzoid Tumors of Uncertain Malignant Potential (STUMP) to assist pathologists with retrieving top K images and their corresponding labels. So, this approach can offer a more explainable CAD tool to pathologists in terms of transparency, trustworthiness, or reliability among other characteristics. |
| title | Siamese Content-based Search Engine for a More Transparent Skin and Breast Cancer Diagnosis through Histological Imaging |
| topic | Computer Vision and Pattern Recognition Information Retrieval Machine Learning |
| url | https://arxiv.org/abs/2401.08272 |