Exploring scalable medical image encoders beyond text supervision
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arXiv
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| Main Authors: | , , , , , , , , , , , , , , |
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| Format: | Preprint |
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2024
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| _version_ | 1866912222745198592 |
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| author | Pérez-García, Fernando Sharma, Harshita Bond-Taylor, Sam Bouzid, Kenza Salvatelli, Valentina Ilse, Maximilian Bannur, Shruthi Castro, Daniel C. Schwaighofer, Anton Lungren, Matthew P. Wetscherek, Maria Teodora Codella, Noel Hyland, Stephanie L. Alvarez-Valle, Javier Oktay, Ozan |
| author_facet | Pérez-García, Fernando Sharma, Harshita Bond-Taylor, Sam Bouzid, Kenza Salvatelli, Valentina Ilse, Maximilian Bannur, Shruthi Castro, Daniel C. Schwaighofer, Anton Lungren, Matthew P. Wetscherek, Maria Teodora Codella, Noel Hyland, Stephanie L. Alvarez-Valle, Javier Oktay, Ozan |
| contents | Language-supervised pre-training has proven to be a valuable method for extracting semantically meaningful features from images, serving as a foundational element in multimodal systems within the computer vision and medical imaging domains. However, the computed features are limited by the information contained in the text, which is particularly problematic in medical imaging, where the findings described by radiologists focus on specific observations. This challenge is compounded by the scarcity of paired imaging-text data due to concerns over leakage of personal health information. In this work, we fundamentally challenge the prevailing reliance on language supervision for learning general-purpose biomedical imaging encoders. We introduce RAD-DINO, a biomedical image encoder pre-trained solely on unimodal biomedical imaging data that obtains similar or greater performance than state-of-the-art biomedical language-supervised models on a diverse range of benchmarks. Specifically, the quality of learned representations is evaluated on standard imaging tasks (classification and semantic segmentation), and a vision-language alignment task (text report generation from images). To further demonstrate the drawback of language supervision, we show that features from RAD-DINO correlate with other medical records (e.g., sex or age) better than language-supervised models, which are generally not mentioned in radiology reports. Finally, we conduct a series of ablations determining the factors in RAD-DINO's performance; notably, we observe that RAD-DINO's downstream performance scales well with the quantity and diversity of training data, demonstrating that image-only supervision is a scalable approach for training a foundational biomedical image encoder. Model weights of RAD-DINO trained on publicly available datasets are available at https://huggingface.co/microsoft/rad-dino. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2401_10815 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Exploring scalable medical image encoders beyond text supervision Pérez-García, Fernando Sharma, Harshita Bond-Taylor, Sam Bouzid, Kenza Salvatelli, Valentina Ilse, Maximilian Bannur, Shruthi Castro, Daniel C. Schwaighofer, Anton Lungren, Matthew P. Wetscherek, Maria Teodora Codella, Noel Hyland, Stephanie L. Alvarez-Valle, Javier Oktay, Ozan Computer Vision and Pattern Recognition Language-supervised pre-training has proven to be a valuable method for extracting semantically meaningful features from images, serving as a foundational element in multimodal systems within the computer vision and medical imaging domains. However, the computed features are limited by the information contained in the text, which is particularly problematic in medical imaging, where the findings described by radiologists focus on specific observations. This challenge is compounded by the scarcity of paired imaging-text data due to concerns over leakage of personal health information. In this work, we fundamentally challenge the prevailing reliance on language supervision for learning general-purpose biomedical imaging encoders. We introduce RAD-DINO, a biomedical image encoder pre-trained solely on unimodal biomedical imaging data that obtains similar or greater performance than state-of-the-art biomedical language-supervised models on a diverse range of benchmarks. Specifically, the quality of learned representations is evaluated on standard imaging tasks (classification and semantic segmentation), and a vision-language alignment task (text report generation from images). To further demonstrate the drawback of language supervision, we show that features from RAD-DINO correlate with other medical records (e.g., sex or age) better than language-supervised models, which are generally not mentioned in radiology reports. Finally, we conduct a series of ablations determining the factors in RAD-DINO's performance; notably, we observe that RAD-DINO's downstream performance scales well with the quantity and diversity of training data, demonstrating that image-only supervision is a scalable approach for training a foundational biomedical image encoder. Model weights of RAD-DINO trained on publicly available datasets are available at https://huggingface.co/microsoft/rad-dino. |
| title | Exploring scalable medical image encoders beyond text supervision |
| topic | Computer Vision and Pattern Recognition |
| url | https://arxiv.org/abs/2401.10815 |