Imagen de Portada

Approximating a gene regulatory network from non-sequential data

Fuente: arXiv

Guardado en:

Detalles Bibliográficos
Autores principales:	Stein, Cliff, Worah, Pratik
Formato:	Preprint
Publicado:	2024
Materias:	Genomics
Acceso en línea:	Acceder al recurso
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

Ejemplares similares

Approaches for benchmarking single-cell gene regulatory network inference methods
por: Uzun, Yasin
Publicado: (2023)

Predicting the genetic component of gene expression using gene regulatory networks
por: Mohammad, Gutama Ibrahim, et al.
Publicado: (2024)

Integrated GWAS and Fst analysis identify flowering‐time regulatory genes in maize
por: Dong Wang, et al.
Publicado: (2026)

Phenotypic divergence of Homo sapiens is driven by the evolution of human-specific genomic regulatory networks via two mechanistically distinct pathways of creation of divergent regulatory DNA sequences
por: Glinsky, Gennadi
Publicado: (2015)

A mechanistically interpretable neural network for regulatory genomics
por: Tseng, Alex M., et al.
Publicado: (2024)

Pangenome insights into structural variation and functional diversification of barley CCT motif genes
por: Zihao Zhu, et al.
Publicado: (2025)

Perspective on recent developments and challenges in regulatory and systems genomics
por: Zeiltinger, Julia, et al.
Publicado: (2024)

inMOTIFin: a lightweight end-to-end simulation software for regulatory sequences
por: Ferenc, Katalin, et al.
Publicado: (2025)

Are gene-by-environment interactions leveraged in multi-modality neural networks for breast cancer prediction?
por: Isgut, Monica, et al.
Publicado: (2024)

Integrating GWAS with a gene co‐expression network better prioritizes candidate genes associated with root metaxylem phenes in maize
por: Stephanie P. Klein, et al.
Publicado: (2024)

A genome-scale deep learning model to predict gene expression changes of genetic perturbations from multiplex biological networks
por: Zhan, Lingmin, et al.
Publicado: (2024)

Supplementary information for "Factors influencing the accuracy and precision in dating single gene trees"
por: Louvel, Guillaume, et al.
Publicado: (2024)

Origin of $α$-satellite repeat arrays from mitochondrial molecular fossils -- sequential insertion, expansion, and evolution in the nuclear genome
por: Zhou, Yihang
Publicado: (2025)

Identification and characterization of unique to human regulatory sequences in embryonic stem cells reveal associations with transposable elements, distal enhancers, non-coding RNA, and DNA methylation-driven mechanisms of genome editing
por: Glinsky, Gennadi
Publicado: (2014)

A genomic dominion with regulatory dependencies on human-specific single-nucleotide changes in Modern Humans
por: Glinsky, Gennadi V.
Publicado: (2019)

AMRScan: A hybrid R and Nextflow toolkit for rapid antimicrobial resistance gene detection from sequencing data
por: Lai, Kaitao
Publicado: (2025)

Informational blueprints reveal condition-dependent gene regulatory architectures
por: Gökmen, Doruk Efe, et al.
Publicado: (2026)

SGC: A semi-supervised pipeline for gene clustering using self-training approach in gene co-expression networks
por: Aghaieabiane, Niloofar, et al.
Publicado: (2022)

Deciphering regulatory architectures from synthetic single-cell expression patterns
por: Pan, Rosalind Wenshan, et al.
Publicado: (2024)

Exploring gene content with pangene graphs
por: Li, Heng, et al.
Publicado: (2024)

Annotation of protein-coding genes in 49 diatom genomes from the Bacillariophyta clade
por: Nenasheva, Natalia, et al.
Publicado: (2024)

Addressing missing context in regulatory variation across primate evolution
por: Housman, Genevieve, et al.
Publicado: (2025)

GenVarFormer: Predicting gene expression from long-range mutations in cancer
por: Laub, David, et al.
Publicado: (2025)

Analysis of evolutionary origins of genomic loci harboring 59,732 candidate human-specific regulatory sequences identifies genetic divergence patterns during evolution of Great Apes
por: Glinsky, Gennadi
Publicado: (2018)

Identifying genes associated with phenotypes using machine and deep learning
por: Muneeb, Muhammad, et al.
Publicado: (2026)

Hemichordate cis-regulatory genomics and the gene expression dynamics of deuterostomes.
por: Pérez-Posada, Alberto, et al.
Publicado: (2024)

Genomic characterisation and gene editing of Marinibacterium sp. CCB-SX1 as a new marine chassis for polyhydroxyalkanoate production.
por: Gong, Sixu, et al.
Publicado: (2025)

Predicting cell-specific gene expression profile and knockout impact through deep learning
por: He, Yongjian, et al.
Publicado: (2025)

A selective review of recent developments in spatially variable gene detection for spatial transcriptomics
por: Adhikari, Sikta Das, et al.
Publicado: (2023)

Genome‐wide identification, gene expression and haplotype analysis of the rhomboid‐like gene family in wheat ( Triticum aestivum L.)
por: Yanyan Zhang, et al.
Publicado: (2024)

Allelism of Rps3b and Rps11 revealed by NLR gene capture of resistance genes to Phytophthora sojae in soybean
por: Yanick Asselin, et al.
Publicado: (2025)

PhenotypeToGeneDownloaderR: automated multi-source retrieval and validation of phenotype-associated genes
por: Muneeb, Muhammad, et al.
Publicado: (2026)

Erratum to: Fertilization of grapevine based on gene expression
Publicado: (2024)

Normalization and selecting non-differentially expressed genes improve machine learning modelling of cross-platform transcriptomic data
por: Deng, Fei, et al.
Publicado: (2025)

C3P: Contrastive promoter-protein pretraining yields representations capturing bacterial gene regulation
por: Dufault, Cameron, et al.
Publicado: (2026)

Gene mapping and candidate gene analysis of a sorghum sheathed panicle‐I mutant
por: Jianling Ao, et al.
Publicado: (2025)

HEK-Omics: The promise of omics to optimize HEK293 for recombinant adeno-associated virus (rAAV) gene therapy manufacturing
por: Gurazada, Sai Guna Ranjan, et al.
Publicado: (2024)

Mutations in the dwarf3 gene confer height stability in sorghum
por: Elisabeth Diatta‐Holgate, et al.
Publicado: (2024)

Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage.
por: Feng, Bo, et al.
Publicado: (2025)

Genomic and biochemical comparison of allelic triple‐mutant lines derived from conventional breeding and multiplex gene editing
por: Junqi Liu, et al.
Publicado: (2025)