Cover Image

Modular control of Boolean network models

Fuente: arXiv

Saved in:

Bibliographic Details
Main Authors:	Murrugarra, David, Veliz-Cuba, Alan, Dimitrova, Elena, Kadelka, Claus, Wheeler, Matthew, Laubenbacher, Reinhard
Format:	Preprint
Published:	2024
Subjects:	Molecular Networks
Online Access:	Acceder al recurso
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Stability of Linear Boolean Networks
by: Chandrasekhar, Karthik, et al.
Published: (2022)

Modular Construction of Boolean Networks
by: Wheeler, Matthew, et al.
Published: (2024)

Upper bound for the stability of Boolean networks
by: Bavisetty, Venkata Sai Narayana, et al.
Published: (2025)

The Influence of Canalization on the Robustness of Boolean Networks
by: Kadelka, Claus, et al.
Published: (2016)

Molecular Network Control Through Boolean Canalization
by: Murrugarra, David, et al.
Published: (2015)

Canalization reduces the nonlinearity of regulation in biological networks
by: Kadelka, Claus, et al.
Published: (2024)

Quantifying the Total Effect of Edge Interventions in Discrete Multistate Networks
by: Murrugarra, David, et al.
Published: (2019)

Boolean nested canalizing functions: a comprehensive analysis
by: Li, Yuan, et al.
Published: (2012)

Dynamics of attractor transitions in Boolean networks under noise
by: Min, Byungjoon, et al.
Published: (2025)

On the number of non-degenerate canalizing Boolean functions
by: Kadelka, Claus
Published: (2025)

Canalization as a stabilizing principle of gene regulatory networks: a discrete dynamical systems perspective
by: Kadelka, Claus
Published: (2025)

BoolForge: Controlled Generation and Analysis of Boolean Functions and Networks
by: Kadelka, Claus, et al.
Published: (2025)

Revealing the canalizing structure of Boolean functions: Algorithms and applications
by: Dimitrova, Elena, et al.
Published: (2021)

A meta-analysis of Boolean network models reveals design principles of gene regulatory networks
by: Kadelka, Claus, et al.
Published: (2020)

A modular approach to achieve multistationarity using AND-gates
by: Veliz-Cuba, Alan, et al.
Published: (2026)

Estimating Propensity Parameters using Google PageRank and Genetic Algorithms
by: Murrugarra, David, et al.
Published: (2016)

Algebraic Experimental Design: Theory and Computation
by: Dimitrova, Elena S., et al.
Published: (2022)

Difficult control is related to instability in biologically inspired Boolean networks
by: Daniels, Bryan C., et al.
Published: (2024)

Efficient Shapley values computation for Boolean network models of gene regulation
by: Pham, Giang, et al.
Published: (2026)

Reverse-engineering of polynomial dynamical systems
by: Jarrah, Abdul Salam, et al.
Published: (2006)

Parsimonious computational inference protocol for Boolean networks: Application to osteogenesis
by: Demongeot, Jacques, et al.
Published: (2026)

Optimal Inference of Asynchronous Boolean Network Models
by: Karlebach, Guy
Published: (2025)

Refining Boolean models with the partial most permissive scheme
by: Boina, Nadine Ben, et al.
Published: (2024)

Evolving Diploid Boolean and Multi-Valued Gene Networks
by: Bull, Larry
Published: (2023)

Multicellular control of gene networks
by: Allison, Kyle R.
Published: (2025)

Boolean matrix logic programming for active learning of gene functions in genome-scale metabolic network models
by: Ai, Lun, et al.
Published: (2024)

Translating and evaluating single-cell Boolean network interventions in the multiscale setting
by: Metzcar, John, et al.
Published: (2025)

Computation of Immediate Neighbours of Monotone Boolean Functions
by: Cury, José E. R., et al.
Published: (2024)

Stability conditions of chemical networks in a linear framework
by: Despons, Armand, et al.
Published: (2025)

A novel model class for bowtie biological networks with universal classification properties
by: Johnson, Charles A., et al.
Published: (2025)

Multi-variable control to mitigate loads in CRISPRa networks: Extended Version
by: Manoj, Krishna, et al.
Published: (2024)

mpbn: a simple tool for efficient edition and analysis of elementary properties of Boolean networks
by: Trinh, Van-Giang, et al.
Published: (2024)

A Modular Mechanistic In Silico Model for In Vitro Transcription Process Yield and Product Quality Prediction
by: Wang, Keqi, et al.
Published: (2026)

CANA v1.0.0 and schematodes: efficient quantification of symmetry in Boolean automata
by: Marcus, Austin M., et al.
Published: (2024)

Comparison of reaction networks of insulin signaling
by: Lubenia, Patrick Vincent N., et al.
Published: (2024)

Current and future directions in network biology
by: Zitnik, Marinka, et al.
Published: (2023)

Efficient stochastic simulation of gene regulatory networks using hybrid models of transcriptional bursting
by: Gaillard, Mathilde, et al.
Published: (2025)

Genetic studies through the lens of gene networks
by: Subirana-Granés, Marc, et al.
Published: (2024)

Exact first passage time distribution for nonlinear chemical reaction networks II: monomolecular reactions and a A + B - C type of second-order reaction with arbitrary initial conditions
by: Rao, Changqian, et al.
Published: (2025)

Optimal network sizes for most robust Turing patterns
by: Shaberi, Hazlam S. Ahmad, et al.
Published: (2024)