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| Main Authors: | , , , |
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| Format: | Preprint |
| Published: |
2024
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| Subjects: | |
| Online Access: | https://arxiv.org/abs/2401.16396 |
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| _version_ | 1866929227269406720 |
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| author | Hinton Jr., Raymond J. Byun, Jihyun Vimalajeewa, Dixon Vidakovic, Brani |
| author_facet | Hinton Jr., Raymond J. Byun, Jihyun Vimalajeewa, Dixon Vidakovic, Brani |
| contents | Detecting early-stage ovarian cancer accurately and efficiently is crucial for timely treatment. Various methods for early diagnosis have been explored, including a focus on features derived from protein mass spectra, but these tend to overlook the complex interplay across protein expression levels. We propose an innovative method to automate the search for diagnostic features in these spectra by analyzing their inherent scaling characteristics. We compare two techniques for estimating the self-similarity in a signal using the scaling behavior of its wavelet packet decomposition. The methods are applied to the mass spectra using a rolling window approach, yielding a collection of self-similarity indexes that capture protein interactions, potentially indicative of ovarian cancer. Then, the most discriminatory scaling descriptors from this collection are selected for use in classification algorithms. To assess their effectiveness for early diagnosis of ovarian cancer, the techniques are applied to two datasets from the American National Cancer Institute. Comparative evaluation against an existing wavelet-based method shows that one wavelet packet-based technique led to improved diagnostic performance for one of the analyzed datasets (95.67% vs. 96.78% test accuracy, respectively). This highlights the potential of wavelet packet-based methods to capture novel diagnostic information related to ovarian cancer. This innovative approach offers promise for better early detection and improved patient outcomes in ovarian cancer. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2401_16396 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Ovarian Cancer Diagnostics using Wavelet Packet Scaling Descriptors Hinton Jr., Raymond J. Byun, Jihyun Vimalajeewa, Dixon Vidakovic, Brani Applications Methodology Detecting early-stage ovarian cancer accurately and efficiently is crucial for timely treatment. Various methods for early diagnosis have been explored, including a focus on features derived from protein mass spectra, but these tend to overlook the complex interplay across protein expression levels. We propose an innovative method to automate the search for diagnostic features in these spectra by analyzing their inherent scaling characteristics. We compare two techniques for estimating the self-similarity in a signal using the scaling behavior of its wavelet packet decomposition. The methods are applied to the mass spectra using a rolling window approach, yielding a collection of self-similarity indexes that capture protein interactions, potentially indicative of ovarian cancer. Then, the most discriminatory scaling descriptors from this collection are selected for use in classification algorithms. To assess their effectiveness for early diagnosis of ovarian cancer, the techniques are applied to two datasets from the American National Cancer Institute. Comparative evaluation against an existing wavelet-based method shows that one wavelet packet-based technique led to improved diagnostic performance for one of the analyzed datasets (95.67% vs. 96.78% test accuracy, respectively). This highlights the potential of wavelet packet-based methods to capture novel diagnostic information related to ovarian cancer. This innovative approach offers promise for better early detection and improved patient outcomes in ovarian cancer. |
| title | Ovarian Cancer Diagnostics using Wavelet Packet Scaling Descriptors |
| topic | Applications Methodology |
| url | https://arxiv.org/abs/2401.16396 |