Joint model with latent disease age: overcoming the need for reference time
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arXiv
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| Autori principali: | , , , |
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| Natura: | Preprint |
| Pubblicazione: |
2024
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| _version_ | 1866915028245938176 |
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| author | Ortholand, Juliette Gensollen, Nicolas Durrleman, Stanley Montcel, Sophie Tezenas du |
| author_facet | Ortholand, Juliette Gensollen, Nicolas Durrleman, Stanley Montcel, Sophie Tezenas du |
| contents | Introduction: Heterogeneity of the progression of neurodegenerative diseases is one of the main challenges faced in developing effective therapies. With the increasing number of large clinical databases, disease progression models have led to a better understanding of this heterogeneity. Nevertheless, these diseases may have no clear onset and biological underlying processes may start before the first symptoms. Such an ill-defined disease reference time is an issue for current joint models, which have proven their effectiveness by combining longitudinal and survival data.
Objective In this work, we propose a joint non-linear mixed effect model with a latent disease age, to overcome this need for a precise reference time.
Method: To do so, we utilized an existing longitudinal model with a latent disease age as a longitudinal sub-model and associated it with a survival sub-model that estimates a Weibull distribution from the latent disease age. We then validated our model on different simulated scenarios. Finally, we benchmarked our model with a state-of-the-art joint model and reference survival and longitudinal models on simulated and real data in the context of Amyotrophic Lateral Sclerosis (ALS).
Results: On real data, our model got significantly better results than the state-of-the-art joint model for absolute bias (4.21(4.41) versus 4.24(4.14)(p-value=1.4e-17)), and mean cumulative AUC for right censored events (0.67(0.07) versus 0.61(0.09)(p-value=1.7e-03)).
Conclusion: We showed that our approach is better suited than the state-of-the-art in the context where the reference time is not reliable. This work opens up the perspective to design predictive and personalized therapeutic strategies. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2401_17249 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Joint model with latent disease age: overcoming the need for reference time Ortholand, Juliette Gensollen, Nicolas Durrleman, Stanley Montcel, Sophie Tezenas du Methodology Introduction: Heterogeneity of the progression of neurodegenerative diseases is one of the main challenges faced in developing effective therapies. With the increasing number of large clinical databases, disease progression models have led to a better understanding of this heterogeneity. Nevertheless, these diseases may have no clear onset and biological underlying processes may start before the first symptoms. Such an ill-defined disease reference time is an issue for current joint models, which have proven their effectiveness by combining longitudinal and survival data. Objective In this work, we propose a joint non-linear mixed effect model with a latent disease age, to overcome this need for a precise reference time. Method: To do so, we utilized an existing longitudinal model with a latent disease age as a longitudinal sub-model and associated it with a survival sub-model that estimates a Weibull distribution from the latent disease age. We then validated our model on different simulated scenarios. Finally, we benchmarked our model with a state-of-the-art joint model and reference survival and longitudinal models on simulated and real data in the context of Amyotrophic Lateral Sclerosis (ALS). Results: On real data, our model got significantly better results than the state-of-the-art joint model for absolute bias (4.21(4.41) versus 4.24(4.14)(p-value=1.4e-17)), and mean cumulative AUC for right censored events (0.67(0.07) versus 0.61(0.09)(p-value=1.7e-03)). Conclusion: We showed that our approach is better suited than the state-of-the-art in the context where the reference time is not reliable. This work opens up the perspective to design predictive and personalized therapeutic strategies. |
| title | Joint model with latent disease age: overcoming the need for reference time |
| topic | Methodology |
| url | https://arxiv.org/abs/2401.17249 |