A PNP ion channel deep learning solver with local neural network and finite element input data
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arXiv
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| Autori principali: | , , , , |
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| Natura: | Preprint |
| Pubblicazione: |
2024
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| _version_ | 1866929297375100928 |
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| author | Lee, Hwi Chao, Zhen Cobb, Harris Liu, Yingjie Xie, Dexuan |
| author_facet | Lee, Hwi Chao, Zhen Cobb, Harris Liu, Yingjie Xie, Dexuan |
| contents | In this paper, a deep learning method for solving an improved one-dimensional Poisson-Nernst-Planck ion channel (PNPic) model, called the PNPic deep learning solver, is presented. In particular, it combines a novel local neural network scheme with an effective PNPic finite element solver. Since the input data of the neural network scheme only involves a small local patch of coarse grid solutions, which the finite element solver can quickly produce, the PNPic deep learning solver can be trained much faster than any corresponding conventional global neural network solvers. After properly trained, it can output a predicted PNPic solution in a much higher degree of accuracy than the low cost coarse grid solutions and can reflect different perturbation cases on the parameters, ion channel subregions, and interface and boundary values, etc. Consequently, the PNPic deep learning solver can generate a numerical solution with high accuracy for a family of PNPic models. As an initial study, two types of numerical tests were done by perturbing one and two parameters of the PNPic model, respectively, as well as the tests done by using a few perturbed interface positions of the model as training samples. These tests demonstrate that the PNPic deep learning solver can generate highly accurate PNPic numerical solutions. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2401_17513 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | A PNP ion channel deep learning solver with local neural network and finite element input data Lee, Hwi Chao, Zhen Cobb, Harris Liu, Yingjie Xie, Dexuan Biological Physics Artificial Intelligence Computational Physics 92-08 In this paper, a deep learning method for solving an improved one-dimensional Poisson-Nernst-Planck ion channel (PNPic) model, called the PNPic deep learning solver, is presented. In particular, it combines a novel local neural network scheme with an effective PNPic finite element solver. Since the input data of the neural network scheme only involves a small local patch of coarse grid solutions, which the finite element solver can quickly produce, the PNPic deep learning solver can be trained much faster than any corresponding conventional global neural network solvers. After properly trained, it can output a predicted PNPic solution in a much higher degree of accuracy than the low cost coarse grid solutions and can reflect different perturbation cases on the parameters, ion channel subregions, and interface and boundary values, etc. Consequently, the PNPic deep learning solver can generate a numerical solution with high accuracy for a family of PNPic models. As an initial study, two types of numerical tests were done by perturbing one and two parameters of the PNPic model, respectively, as well as the tests done by using a few perturbed interface positions of the model as training samples. These tests demonstrate that the PNPic deep learning solver can generate highly accurate PNPic numerical solutions. |
| title | A PNP ion channel deep learning solver with local neural network and finite element input data |
| topic | Biological Physics Artificial Intelligence Computational Physics 92-08 |
| url | https://arxiv.org/abs/2401.17513 |