Exact minimax entropy models of large-scale neuronal activity
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arXiv
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| Format: | Preprint |
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2023
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| _version_ | 1866917580172689408 |
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| author | Lynn, Christopher W. Yu, Qiwei Pang, Rich Palmer, Stephanie E. Bialek, William |
| author_facet | Lynn, Christopher W. Yu, Qiwei Pang, Rich Palmer, Stephanie E. Bialek, William |
| contents | In the brain, fine-scale correlations combine to produce macroscopic patterns of activity. However, as experiments record from larger and larger populations, we approach a fundamental bottleneck: the number of correlations one would like to include in a model grows larger than the available data. In this undersampled regime, one must focus on a sparse subset of correlations; the optimal choice contains the maximum information about patterns of activity or, equivalently, minimizes the entropy of the inferred maximum entropy model. Applying this ``minimax entropy" principle is generally intractable, but here we present an exact and scalable solution for pairwise correlations that combine to form a tree (a network without loops). Applying our method to over one thousand neurons in the mouse hippocampus, we find that the optimal tree of correlations reduces our uncertainty about the population activity by 14% (over 50 times more than a random tree). Despite containing only 0.1% of all pairwise correlations, this minimax entropy model accurately predicts the observed large-scale synchrony in neural activity and becomes even more accurate as the population grows. The inferred Ising model is almost entirely ferromagnetic (with positive interactions) and exhibits signatures of thermodynamic criticality. These results suggest that a sparse backbone of excitatory interactions may play an important role in driving collective neuronal activity. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2402_00007 |
| institution | arXiv |
| publishDate | 2023 |
| record_format | arxiv |
| spellingShingle | Exact minimax entropy models of large-scale neuronal activity Lynn, Christopher W. Yu, Qiwei Pang, Rich Palmer, Stephanie E. Bialek, William Biological Physics Disordered Systems and Neural Networks Statistical Mechanics Neurons and Cognition In the brain, fine-scale correlations combine to produce macroscopic patterns of activity. However, as experiments record from larger and larger populations, we approach a fundamental bottleneck: the number of correlations one would like to include in a model grows larger than the available data. In this undersampled regime, one must focus on a sparse subset of correlations; the optimal choice contains the maximum information about patterns of activity or, equivalently, minimizes the entropy of the inferred maximum entropy model. Applying this ``minimax entropy" principle is generally intractable, but here we present an exact and scalable solution for pairwise correlations that combine to form a tree (a network without loops). Applying our method to over one thousand neurons in the mouse hippocampus, we find that the optimal tree of correlations reduces our uncertainty about the population activity by 14% (over 50 times more than a random tree). Despite containing only 0.1% of all pairwise correlations, this minimax entropy model accurately predicts the observed large-scale synchrony in neural activity and becomes even more accurate as the population grows. The inferred Ising model is almost entirely ferromagnetic (with positive interactions) and exhibits signatures of thermodynamic criticality. These results suggest that a sparse backbone of excitatory interactions may play an important role in driving collective neuronal activity. |
| title | Exact minimax entropy models of large-scale neuronal activity |
| topic | Biological Physics Disordered Systems and Neural Networks Statistical Mechanics Neurons and Cognition |
| url | https://arxiv.org/abs/2402.00007 |