:: Library Catalog

Cover Image

Saved in:

Bibliographic Details
Main Authors:	Weisbart, Erin, Kumar, Ankur, Arevalo, John, Carpenter, Anne E., Cimini, Beth A., Singh, Shantanu
Format:	Preprint
Published:	2024
Subjects:	Quantitative Methods
Online Access:	https://arxiv.org/abs/2402.02203
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Reproducible image-based profiling with Pycytominer
by: Serrano, Erik, et al.
Published: (2023)

Learning Molecular Representation in a Cell
by: Liu, Gang, et al.
Published: (2024)

CellProfiler plugins -- an easy image analysis platform integration for containers and Python tools
by: Weisbart, Erin, et al.
Published: (2023)

Defining the boundaries: challenges and advances in identifying cells in microscopy images
by: Gogoberidze, Nodar, et al.
Published: (2023)

cp_measure: API-first feature extraction for image-based profiling workflows
by: Muñoz, Alán F., et al.
Published: (2025)

Evaluating Integrative Strategies for Incorporating Phenotypic Features in Spatial Transcriptomics
by: Moser, Levin M, et al.
Published: (2025)

Progress and new challenges in image-based profiling
by: Serrano, Erik, et al.
Published: (2025)

Foreground-aware Virtual Staining for Accurate 3D Cell Morphological Profiling
by: Kalinin, Alexandr A., et al.
Published: (2025)

Creating and troubleshooting microscopy analysis workflows: common challenges and common solutions
by: Cimini, Beth A
Published: (2024)

cubic: CUDA-accelerated 3D Bioimage Computing
by: Kalinin, Alexandr A., et al.
Published: (2025)

Pycro-manager: open-source software for integrated microscopy hardware control and image processing
by: Pinkard, Henry, et al.
Published: (2020)

Detecting transitions between collective motion regimes using functional hypothesis test of the time-varying persistence homology
by: Sathiyakumar, Thevasha, et al.
Published: (2024)

Dynamical Inference of Cell Size Regulation Parameters
by: Nieto, Cesar, et al.
Published: (2025)

Virtual Cells: From Conceptual Frameworks to Biomedical Applications
by: Bhardwaj, Saurabh, et al.
Published: (2025)

The Lipid Interactome: An interactive and open access platform for exploring cellular lipid-protein interactomes
by: Guzman, Gaelen, et al.
Published: (2025)

MovementVR: An open-source tool for the study of motor control and learning in virtual reality
by: Rossi, Cristina, et al.
Published: (2025)

smFISH_batchRun: A smFISH image processing tool for single-molecule RNA Detection and 3D reconstruction
by: John, Nimmy S., et al.
Published: (2025)

Comprehensively stratifying MCIs into distinct risk subtypes based on brain imaging genetics fusion learning
by: Shang, Muheng, et al.
Published: (2025)

Forecasting and predicting stochastic agent-based model data with biologically-informed neural networks
by: Nardini, John T.
Published: (2023)

Data mining of public genomic repositories: harnessing off-target reads to expand microbial pathogen genomic resources
by: Richard, Damien, et al.
Published: (2025)

Synthesizing study-specific controls using generative models on open access datasets for harmonized multi-study analyses
by: Gadewar, Shruti P., et al.
Published: (2024)

Benchmarking open-source tools for in silico antiviral drug discovery
by: Elton, Daniel C., et al.
Published: (2026)

Grad-CAMO: Learning Interpretable Single-Cell Morphological Profiles from 3D Cell Painting Images
by: Gopalakrishnan, Vivek, et al.
Published: (2024)

Information-Theoretical Measures for Developmental Cell-Fate Proportioning Processes
by: Ramirez-Sierra, Michael A., et al.
Published: (2025)

The SChISM study: Cell-free DNA size profiles as predictors of progression in advanced carcinoma treated with immune-checkpoint inhibitors
by: Phuong, Linh Nguyen, et al.
Published: (2025)

Deciphering Cell Systems: Machine Learning Perspectives And Approaches For The Analysis Of Single-Cell Data
by: Yang, Yongjian
Published: (2024)

FBApro: A fast, simple linear transformation for diverse metabolic modeling tasks
by: Bruner, Ariel, et al.
Published: (2026)

SPM 25: open source neuroimaging analysis software
by: Tierney, Tim M., et al.
Published: (2025)

A model of tuberculosis progression using CompuCell3D
by: Doran, James W. G., et al.
Published: (2026)

An open-source computational framework for immersed fluid-structure interaction modeling using FEBio and MFEM
by: Black, Ryan T., et al.
Published: (2026)

Neurosymbolic Learning for Predicting Cell Fate Decisions from Longitudinal Single Cell Transcriptomics in Paediatric Acute Myeloid Leukemia
by: Uthamacumaran, Abicumaran, et al.
Published: (2025)

A geometric feature tracking approach for noninvasive patient specific estimation of leaflet strain from 3D images of heart valves
by: Wu, Wensi, et al.
Published: (2025)

SynCell: Contextualized Drug Synergy Prediction
by: Peng, Keqin, et al.
Published: (2025)

Deep Clustering for Blood Cell Classification and Quantification
by: Macarie-Ancau, Mihaela, et al.
Published: (2025)

Associations between exposure to OPEs and rheumatoid arthritis risk among adults in NHANES, 2011-2018
by: Singh, Sneha, et al.
Published: (2024)

Whole slide and microscopy image analysis with QuPath and OMERO
by: Leplat, Léo, et al.
Published: (2026)

Modeling principles for a physiology-based whole-body model of human metabolism
by: Blicher, Laura Hjort, et al.
Published: (2024)

Convolutional Neural Network Transformer (CNNT) for Fluorescence Microscopy image Denoising with Improved Generalization and Fast Adaptation
by: Rehman, Azaan, et al.
Published: (2024)

FRAP analysis Measuring biophysical kinetic parameters using image analysis
by: Hiremath, Sharva V., et al.
Published: (2024)

HoverFast: an accurate, high-throughput, clinically deployable nuclear segmentation tool for brightfield digital pathology images
by: Liakopoulos, Petros, et al.
Published: (2024)