Beyond Strong labels: Weakly-supervised Learning Based on Gaussian Pseudo Labels for The Segmentation of Ellipse-like Vascular Structures in Non-contrast CTs
Fuente:
arXiv
Enregistré dans:
| Auteurs principaux: | , , , , |
|---|---|
| Format: | Preprint |
| Publié: |
2024
|
| Sujets: | |
| Accès en ligne: | |
| Tags: |
Ajouter un tag
Pas de tags, Soyez le premier à ajouter un tag!
|
| _version_ | 1866914997319237632 |
|---|---|
| author | Ma, Qixiang Łucas, Antoine Shu, Huazhong Kaladji, Adrien Haigron, Pascal |
| author_facet | Ma, Qixiang Łucas, Antoine Shu, Huazhong Kaladji, Adrien Haigron, Pascal |
| contents | Deep-learning-based automated segmentation of vascular structures in preoperative CT scans contributes to computer-assisted diagnosis and intervention procedure in vascular diseases. While CT angiography (CTA) is the common standard, non-contrast CT imaging is significant as a contrast-risk-free alternative, avoiding complications associated with contrast agents. However, the challenges of labor-intensive labeling and high labeling variability due to the ambiguity of vascular boundaries hinder conventional strong-label-based, fully-supervised learning in non-contrast CTs. This paper introduces a weakly-supervised framework using ellipses' topology in slices, including 1) an efficient annotation process based on predefined standards, 2) ellipse-fitting processing, 3) the generation of 2D Gaussian heatmaps serving as pseudo labels, 4) a training process through a combination of voxel reconstruction loss and distribution loss with the pseudo labels. We assess the effectiveness of the proposed method on one local and two public datasets comprising non-contrast CT scans, particularly focusing on the abdominal aorta. On the local dataset, our weakly-supervised learning approach based on pseudo labels outperforms strong-label-based fully-supervised learning (1.54\% of Dice score on average), reducing labeling time by around 82.0\%. The efficiency in generating pseudo labels allows the inclusion of label-agnostic external data in the training set, leading to an additional improvement in performance (2.74\% of Dice score on average) with a reduction of 66.3\% labeling time, where the labeling time remains considerably less than that of strong labels. On the public dataset, the pseudo labels achieve an overall improvement of 1.95\% in Dice score for 2D models while a reduction of 11.65 voxel spacing in Hausdorff distance for 3D model. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2402_03492 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Beyond Strong labels: Weakly-supervised Learning Based on Gaussian Pseudo Labels for The Segmentation of Ellipse-like Vascular Structures in Non-contrast CTs Ma, Qixiang Łucas, Antoine Shu, Huazhong Kaladji, Adrien Haigron, Pascal Image and Video Processing Computer Vision and Pattern Recognition Deep-learning-based automated segmentation of vascular structures in preoperative CT scans contributes to computer-assisted diagnosis and intervention procedure in vascular diseases. While CT angiography (CTA) is the common standard, non-contrast CT imaging is significant as a contrast-risk-free alternative, avoiding complications associated with contrast agents. However, the challenges of labor-intensive labeling and high labeling variability due to the ambiguity of vascular boundaries hinder conventional strong-label-based, fully-supervised learning in non-contrast CTs. This paper introduces a weakly-supervised framework using ellipses' topology in slices, including 1) an efficient annotation process based on predefined standards, 2) ellipse-fitting processing, 3) the generation of 2D Gaussian heatmaps serving as pseudo labels, 4) a training process through a combination of voxel reconstruction loss and distribution loss with the pseudo labels. We assess the effectiveness of the proposed method on one local and two public datasets comprising non-contrast CT scans, particularly focusing on the abdominal aorta. On the local dataset, our weakly-supervised learning approach based on pseudo labels outperforms strong-label-based fully-supervised learning (1.54\% of Dice score on average), reducing labeling time by around 82.0\%. The efficiency in generating pseudo labels allows the inclusion of label-agnostic external data in the training set, leading to an additional improvement in performance (2.74\% of Dice score on average) with a reduction of 66.3\% labeling time, where the labeling time remains considerably less than that of strong labels. On the public dataset, the pseudo labels achieve an overall improvement of 1.95\% in Dice score for 2D models while a reduction of 11.65 voxel spacing in Hausdorff distance for 3D model. |
| title | Beyond Strong labels: Weakly-supervised Learning Based on Gaussian Pseudo Labels for The Segmentation of Ellipse-like Vascular Structures in Non-contrast CTs |
| topic | Image and Video Processing Computer Vision and Pattern Recognition |
| url | https://arxiv.org/abs/2402.03492 |