Zepyros: A webserver to evaluate the shape complementarity of protein-protein interfaces
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arXiv
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| Autori principali: | , , , , |
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| Natura: | Preprint |
| Pubblicazione: |
2024
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| _version_ | 1866915448313872384 |
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| author | Miotto, Mattia Di Rienzo, Lorenzo Bo', Leonardo Ruocco, Giancarlo Milanetti, Edoardo |
| author_facet | Miotto, Mattia Di Rienzo, Lorenzo Bo', Leonardo Ruocco, Giancarlo Milanetti, Edoardo |
| contents | Shape complementarity of molecular surfaces at the interfaces is a well-known characteristic of protein-protein binding regions, and it is critical in influencing the stability of the complex. Measuring such complementarity is at the basis of methods for both the prediction of possible interactions and for the design/optimization of speficic ones. However, only a limited number of tools are currently available to efficiently and rapidly assess it. Here, we introduce Zepyros, a webserver for fast measuring of the shape complementarity between two molecular interfaces of a given protein-protein complex using structural information. Zepyros is implemented as a publicly available tool with a user-friendly interface. Our server can be found at the following link (all major browser supported): https://zepyros.bio-groups.com |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2402_06960 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Zepyros: A webserver to evaluate the shape complementarity of protein-protein interfaces Miotto, Mattia Di Rienzo, Lorenzo Bo', Leonardo Ruocco, Giancarlo Milanetti, Edoardo Quantitative Methods Shape complementarity of molecular surfaces at the interfaces is a well-known characteristic of protein-protein binding regions, and it is critical in influencing the stability of the complex. Measuring such complementarity is at the basis of methods for both the prediction of possible interactions and for the design/optimization of speficic ones. However, only a limited number of tools are currently available to efficiently and rapidly assess it. Here, we introduce Zepyros, a webserver for fast measuring of the shape complementarity between two molecular interfaces of a given protein-protein complex using structural information. Zepyros is implemented as a publicly available tool with a user-friendly interface. Our server can be found at the following link (all major browser supported): https://zepyros.bio-groups.com |
| title | Zepyros: A webserver to evaluate the shape complementarity of protein-protein interfaces |
| topic | Quantitative Methods |
| url | https://arxiv.org/abs/2402.06960 |